View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_16 (Length: 432)
Name: NF14178_low_16
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 18269629 - 18269228
Alignment:
| Q |
16 |
atcacatgaaacactaaacgacaacaaa-caagttaaaaccacgtaccaccaaattagaagtatcactttcttcaaagcacttagtaaaatgttcctcgg |
114 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18269629 |
atcacatgaaacactaaacgacaacaaaacaagtaaaaaccacgtaccaccaaattagaagtatcactttcttcaaagcacttagtaaaatgttcctcgg |
18269530 |
T |
|
| Q |
115 |
acaaccacgagcagtctctaacccgaatctcggtcggacttccaccaacaagaagttcaaagaaatgatcattcattcttctcgaatcacacagcaactg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18269529 |
acaaccacgagcagtctctaacccgaatctcggtcggacttccaccaacaagaagttcaaagaaatgatcattcattcttctcgaatcacacaacaactg |
18269430 |
T |
|
| Q |
215 |
actaagcctatgcctcaaaccatccggcacaccctcaagcgaaacaatcccatccacattcttagcaagtatcctaatacaaagctcctgcaatgacgga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18269429 |
actaagcctatgcctcaaaccatccggcacaccctcaagcgaaacaatcgcatccacattcttagcaagtatcctaatacaaagctcttgcaatgacgga |
18269330 |
T |
|
| Q |
315 |
acagttaactttccacctaacttctccaaatccgttttcggtttccactttatcttatcaatcaaattctcctgcacagtatcagaaccaaatggaatcc |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18269329 |
acagttaactttccacctaacttctccaaacccgttttcggtttccactttatcttatcaatcaaattctcctgcacagtatcagaaccaaatggaatcc |
18269230 |
T |
|
| Q |
415 |
at |
416 |
Q |
| |
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|| |
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|
| T |
18269229 |
at |
18269228 |
T |
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