View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_17 (Length: 418)
Name: NF14178_low_17
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 43164056 - 43164458
Alignment:
| Q |
1 |
catgagaaaataactaatagtcgttgatgataatttagtcaatgcattagaaacctaaaaacaaaatgtaaagggtttgaaaattagacaacaagctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43164056 |
catgagaaaataactaatagtcgttgatgataatttagtcaatgcattagaaacctaaaaacaaaatgtaaagggtttgaaaattagacaactggctatt |
43164155 |
T |
|
| Q |
101 |
tgtgagtgactgaaaggttgccattaactgtttttgaggtcactcttgtgaaggatagaaatcttcatgtcgaattcgaggtcattcaacacacaaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164156 |
tgtgagtgactgaaaggttgccattaactgtttttgaggtcactcttgtgaaggatagaaatcttcatgtcgaattcgaggtcattcaacacacaaatga |
43164255 |
T |
|
| Q |
201 |
cattcagcgatcgaagagtagagatcattctgcccgtgtgagtccagatcagcttttaagtgtgtgttgtactgctatacatctctgcttgatttttgtt |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43164256 |
cattcagcgatcgaagagcagagatcattctgcccgtgtgagtccagatcagcttttgagtgtgtgttgtactgctatacgtctctgcttgatttttgtt |
43164355 |
T |
|
| Q |
301 |
gtcttttactcttgtttcttgatcccatgaatgtcctaatgctaatgctgtagtggaagcacatttcttgggttctttttgtttctaaagttctggtata |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164356 |
gtcttttactcttgtttcttgatcccatgaatggcctaatgctaatgctgtagtggaagcacatttcttgggttctttttgtttctaaagttctggtata |
43164455 |
T |
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| Q |
401 |
ata |
403 |
Q |
| |
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||| |
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| T |
43164456 |
ata |
43164458 |
T |
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