View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_19 (Length: 414)
Name: NF14178_low_19
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 38607995 - 38607744
Alignment:
| Q |
7 |
gagaagcaaaggttgaagagcttgccatggttgttagagaaaaagtagaagaagcagtgattgaagatttgatttcaattctgagagagggaaaatgaat |
106 |
Q |
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| T |
38607995 |
gagaagaaaaggttgaagagctttccatggttgtttgagaaaaagtagaagaagcagtgattgaagatttgatttcaattctgagagagggaaaatgaat |
38607896 |
T |
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| Q |
107 |
ggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaacggttagagagattttgtaatcgtgtgagtttgttacgcagt |
206 |
Q |
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| T |
38607895 |
ggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttagagagattttgtaatcgtgtgagtttgttacgcggt |
38607796 |
T |
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| Q |
207 |
tgttagaggtttaaagttttcgaatctttgggattcgtaagcgtgccaagta |
258 |
Q |
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| T |
38607795 |
tgttagaggtttaaagttttcgaatctttgggatttgtaagcgtgccaagta |
38607744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 38792778 - 38792528
Alignment:
| Q |
7 |
gagaagcaaaggttgaagagcttgccatggttgttagagaaaaagtagaagaagcagtgattgaagatttgatttcaattctgagagagggaaaatgaat |
106 |
Q |
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| T |
38792778 |
gagaagaaaaggttgaagagctttccatggttgtttgagaaaaagtagaagaagcagtgattgaagatttgatttcaattctgagagagggaaaatgaat |
38792679 |
T |
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| Q |
107 |
ggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaacggttagagagattttgtaatcgtgtgagtttgttacgcagt |
206 |
Q |
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| T |
38792678 |
ggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttagagagattttgtaatcgtgtgagtttgttacgcggt |
38792579 |
T |
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| Q |
207 |
tgttagaggtttaaagttttcgaatctttgggattcgtaagcgtgccaagta |
258 |
Q |
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| T |
38792578 |
tgttagaggtttaaagttttcgaat-tttgggatttgtaagcgtgccaagta |
38792528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 38607350 - 38607185
Alignment:
| Q |
36 |
gttgttagagaaaaagtagaagaagcagtgattgaagatttgatttcaattctgagagagggaaaatgaatggaatgaggatgaaatgcagagtgaagta |
135 |
Q |
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| T |
38607350 |
gttgttagagaaaacgtagaagaagcggtgattaaagatttgatttcaattatgagagagggaaaatgaatggaatgaggatgaaatgcagagtgaagta |
38607251 |
T |
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| Q |
136 |
cttatatacgcgcgcgcgggggagtgaaacggttagagagattttgtaatcgtgtgagtttgttac |
201 |
Q |
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| T |
38607250 |
cttatatacgcgcgcgcaagagagtgaaatggttagagaaatattgtaagcgtgtgagtttgttac |
38607185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 38122216 - 38122351
Alignment:
| Q |
102 |
tgaatggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaacggttag-agaga-ttttgtaatcgtgtgagtttgtt |
199 |
Q |
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||||| |||||| |||||| ||||| |||||||| |||||||||||||||||||| | | |||||||||| ||||| | |||||| |||||||||||||| |
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| T |
38122216 |
tgaatcgaatgaagatgaattgcagggtgaagtatttatatacgcgcgcgcggggaaattaaacggttagaagagagtattgtaagcgtgtgagtttgtt |
38122315 |
T |
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| Q |
200 |
acgcagttgttagaggtttaaa-gttttcgaatctt |
234 |
Q |
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| T |
38122316 |
acgcggttgttatagatttaaacgtttttgaatctt |
38122351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 38607641 - 38607598
Alignment:
| Q |
346 |
aactcttcacattattgcaggtttttggttgtaatacatctcat |
389 |
Q |
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| T |
38607641 |
aactcttcacattattgcgggtttttggttgtaacacatctcat |
38607598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 38792439 - 38792386
Alignment:
| Q |
343 |
gataactcttcacattattgcag-gtttttggttgtaatacatctcatcatgag |
395 |
Q |
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| T |
38792439 |
gataactcttcacattattgcagattttttgtttgcaacacatctcatcatgag |
38792386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 28731779 - 28731892
Alignment:
| Q |
99 |
aaatgaatggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaacggttag-agaga-ttttgtaatcgtgtgagttt |
196 |
Q |
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||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| ||||| | |||||| ||||| ||||| |
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| T |
28731779 |
aaatgaatggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgttagttt |
28731878 |
T |
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| Q |
197 |
gttacgcagttgtt |
210 |
Q |
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| T |
28731879 |
gttacgcggttgtt |
28731892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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