View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_2 (Length: 839)
Name: NF14178_low_2
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 27576628 - 27577235
Alignment:
| Q |
18 |
acttcgaccggaggatagaggacaggagtggtacaagggtttcgagtggaaagggagatttgaatgatgggtcatggtttcggtttggggatcgctggga |
117 |
Q |
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| T |
27576628 |
acttcgaccggaggatagaggacaggagtggtacaagggttttgagtggaaagggagatttgaatgatgggtcatggttttggtttggggatcgcaggga |
27576727 |
T |
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| Q |
118 |
ggctggcagcagggttcatgacacaggtcggtctaaccatggaaatggtgcgtgactagaatttgcaggatgtgatcattcagctacgactgacactatt |
217 |
Q |
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| T |
27576728 |
ggctggcagcagggttcatgacacagggcggtctaaccatggaaatggtgcgtgactagaatttgcagggtgtgatcattcagctatgactggcactatt |
27576827 |
T |
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| Q |
218 |
gctagggttcatagtgttgtccgtaagtttggtggtggaggacattaagtttcgatgggtggaaagcaacaaacaggttctaagatgatggcttgttgaa |
317 |
Q |
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| T |
27576828 |
gctagggttcatagtgttgtccgtaagtttggtggtggaagacattaagtttcgattggtggaaagcaacaaacaggttctaagatgatggcttgttgaa |
27576927 |
T |
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| Q |
318 |
aggatgttgatcgcagtgttaatgttatgctgtcattttattttacgattattctagatagactaccttacatggagttgaagaatggttttgaggtatg |
417 |
Q |
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| T |
27576928 |
aggatgttgatcgcagtgttaatgttatgctgtcattttattttacgattattctagatagactaccttacatggagttgaagaatggttttgaggtatg |
27577027 |
T |
|
| Q |
418 |
tggtattttgtcggacttttacatgtccacgaaagaaatgttagatggaaattttttggttttgttcgtttatgtgatgtgagggataaaaataaattgt |
517 |
Q |
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| T |
27577028 |
tggtattttgtcggacttttacatgtccacgaaagaaatgttagatggaaattttttggttttgttcttttatgtgatgtgagggataaaaataaattgt |
27577127 |
T |
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| Q |
518 |
tggtagctttaaataatattcggcttgggcaatatcgagtttggactaattatgcttgctttgatcgagatcgctcacctattgagaccattagggatgg |
617 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
27577128 |
tggtagctttaaataatattcggcttaggcaatatcgagtttggactaattatgcatgctttgatcgagatcgctctcctattgagaccattaaggatgg |
27577227 |
T |
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| Q |
618 |
caatgtgg |
625 |
Q |
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| T |
27577228 |
caatgtgg |
27577235 |
T |
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