View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14178_low_20 (Length: 412)
Name: NF14178_low_20
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_20 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 42279837 - 42280216
Alignment:
| Q |
18 |
tttaacatgcattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42279837 |
tttaacatgtattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatattattgatatgatgc |
42279936 |
T |
|
| Q |
118 |
ttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42279937 |
ttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtttcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
42280036 |
T |
|
| Q |
218 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcctttctataacaaactttttgtgtgtttctctataacatttgatatctcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42280037 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcttttctataacaaactttttgtgtgtttctctataacatttgatatctcatc |
42280136 |
T |
|
| Q |
318 |
tttgtatagctttcagggtcctttggtcaaaagaagttcttgcagttgtcaattacttccacatgcttccttattctgaa |
397 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42280137 |
tttgtatagctttcggggtcctttggtcaaaagaagttcttgcagttgtcaattacttccacatgcttccttattctgaa |
42280216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 42253677 - 42254024
Alignment:
| Q |
18 |
tttaacatgcattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42253677 |
tttaacatgcattttttgactcataaaagtcgaatatgattcttatatagcgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
42253776 |
T |
|
| Q |
118 |
ttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42253777 |
ttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatgaagtgctcacagtcgatcgttgaagggtttactaa |
42253876 |
T |
|
| Q |
218 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcctttctataacaaactttttgtgtgtttctctataacatttgatatctcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42253877 |
agttcctatcaaagatttaattgaaaggttcgttacaatcaatatggcttttctataacaaaatttttgtgtgtttctctataacatttgatatctcatc |
42253976 |
T |
|
| Q |
318 |
tttgtatagctttcagggtcctttggtcaaaagaagttcttgcagttg |
365 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
42253977 |
tttgtatagctttcgaggtcctttggtcaaaagaagttctagcagttg |
42254024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 42259272 - 42259617
Alignment:
| Q |
18 |
tttaacatgcattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42259272 |
tttaacatgcattttttgactcataatagtcgaacatgattcttatataatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
42259371 |
T |
|
| Q |
118 |
ttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
217 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42259372 |
ttttgggaagttatacagtgtattcccagagcaaggagagggcagcttctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
42259471 |
T |
|
| Q |
218 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcctttctataacaaactttttgtgtgtttctctataacatttgatatctcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||| || |
|
|
| T |
42259472 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcttttctataacaaac--tttgtgtctttctctacaacatttgatatctcttc |
42259569 |
T |
|
| Q |
318 |
tttgtatagctttcagggtcctttggtcaaaagaagttcttgcagttg |
365 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
42259570 |
tttgtatagcttttggggtcctttggtcaaaagaagttctagcagttg |
42259617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 42267814 - 42268161
Alignment:
| Q |
18 |
tttaacatgcattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267814 |
tttaacatgcattttttgactcataatagttgaacatgattcttatgtaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
42267913 |
T |
|
| Q |
118 |
ttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || | ||||||||||||| | |
|
|
| T |
42267914 |
ttttgggaagttacactgtgcattcccagagcaaagagaggacagcttctcgcttttatataatgaagggctcacagtccatcgatgaagggtttactca |
42268013 |
T |
|
| Q |
218 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcctttctataacaaactttttgtgtgtttctctataacatttgatatctcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268014 |
agttcctatcaaagatttaattgaaaggttcgctacaatcgatatcgcttttctatgacaaactttttgtgtgtttctctataacatttgatatctcatc |
42268113 |
T |
|
| Q |
318 |
tttgtatagctttcagggtcctttggtcaaaagaagttcttgcagttg |
365 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42268114 |
tttgtatagctttcggggtcctttggtcaaaagaagttcttgcagttg |
42268161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 42307520 - 42307706
Alignment:
| Q |
70 |
atttcatatttcccttgtgaataggtgtcaatagtattgatatgatgcttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcg |
169 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | || || |
|
|
| T |
42307520 |
atttcttatttcccttatgaacaggtgtcaatagtatcgatattatgcttttggaaagttacactgtgtattcccagagcaaagagaagacatcttcacg |
42307619 |
T |
|
| Q |
170 |
cttttatataatgaagtgctcacagtcgattgttgaagggtttactaaagttcctatcaaagatttaattgaaaggtttgttacaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42307620 |
cttttatataatgaagtgctcacagtcgatcgatgaagggtttactcaagttcctatcaaagatttaattgaaaggttcgttacaat |
42307706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 42312317 - 42312477
Alignment:
| Q |
92 |
aggtgtcaatagtattgatatgatgcttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctca |
191 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
42312317 |
aggtgtcaatagtaatgatattatgcttttggaaagttacactgtgtattcccagcgcaaagagaagacagcttcacgcttttatataatgaagtgctca |
42312416 |
T |
|
| Q |
192 |
cagtcgattgttgaagggtttactaaagttcctatcaaagatttaattgaaaggtttgtta |
252 |
Q |
| |
|
||||||| | ||| |||| || | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42312417 |
cagtcgacagctgatgggtctattcaagttcctatcaaagatttaattgaaaggttcgtta |
42312477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 42307998 - 42308063
Alignment:
| Q |
292 |
ttctctataacatttgatatctcatctttgtatagctttcagggtcctttggtcaaaagaagttct |
357 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||| |
|
|
| T |
42307998 |
ttctctatgacattttatatctcatctttggatagcgtccggggtcctttggtcaaaagaagttct |
42308063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 42268172 - 42268210
Alignment:
| Q |
359 |
gcagttgtcaattacttccacatgcttccttattctgaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268172 |
gcagttgtcaattacttccacatgcttccttattctgaa |
42268210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 42254036 - 42254073
Alignment:
| Q |
360 |
cagttgtcaattacttccacatgcttccttattctgaa |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42254036 |
cagttgtcaagtacttccacatgcttccttattctgaa |
42254073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 488107 - 488452
Alignment:
| Q |
18 |
tttaacatgcattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
488107 |
tttaacatgcattttttgactcataatagtcgaacatgattcttatataatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgc |
488206 |
T |
|
| Q |
118 |
ttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
217 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
488207 |
ttttgggaagttatacagtgtattcccagagcaaggagagggcagcttctcgcttttatataatgaagtgctcacagtcgattgttgaagggtttactaa |
488306 |
T |
|
| Q |
218 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcctttctataacaaactttttgtgtgtttctctataacatttgatatctcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||| || |
|
|
| T |
488307 |
agttcctatcaaagatttaattgaaaggtttgttacaatcgatatggcttttctataacaaac--tttgtgtctttctctacaacatttgatatctcttc |
488404 |
T |
|
| Q |
318 |
tttgtatagctttcagggtcctttggtcaaaagaagttcttgcagttg |
365 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
488405 |
tttgtatagcttttggggtcctttggtcaaaagaagttctagcagttg |
488452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 25278725 - 25278869
Alignment:
| Q |
107 |
tgatatgatgcttttgggaagttacactgtgtattcccagagcaaagagaggacagcgtctcgcttttatataatgaagtgctcacagtcgattgttgaa |
206 |
Q |
| |
|
|||||| |||||||||||||| |||||| | ||||| || |||||||||| | ||| |||||||||||||||||| ||||||| ||||| || | | |
|
|
| T |
25278725 |
tgatattatgcttttgggaagctacactatctattctcaaagcaaagagaaggaagcttctcgcttttatataatgcagtgctcccagtcaatcaatcag |
25278824 |
T |
|
| Q |
207 |
gggtttactaaagttcctatcaaagatttaattgaaaggtttgtt |
251 |
Q |
| |
|
| | ||| ||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
25278825 |
gaggttattaaagttcccctcaaagatgttattgaaaggtttgtt |
25278869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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