View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14178_low_25 (Length: 390)
Name: NF14178_low_25
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_25 |
 | |
|
| [»] scaffold0112 (5 HSPs) |
| | |
|
| [»] scaffold0759 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0112 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 26130 - 25785
Alignment:
| Q |
17 |
ttatgaactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
26130 |
ttatgaactcgtaaaatattcttatttaatgaaaaattggtttagtacatgcttaatttaataccaaacattcctaaatatgtacgttatatgcatag-- |
26033 |
T |
|
| Q |
117 |
atgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacgg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
26032 |
atgtgtattggttccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagc------ata------ttgtgcaagatacgg |
25945 |
T |
|
| Q |
217 |
tatgggttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttgga---ttttggaatgacctgcattgatacgggc |
313 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||| |
|
|
| T |
25944 |
tatgcgttgttcaatatttgagttgaatccatgcggcaactccataacgtgtcaatgtgtcagtttgcaaatatttggaatgacctgcattggagtacca |
25845 |
T |
|
| Q |
314 |
gctggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccactta |
373 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25844 |
gatggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgctactta |
25785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 41243 - 41101
Alignment:
| Q |
50 |
aaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgc |
149 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
41243 |
aaattaatatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattggtttcaactttaacttcctttgc |
41146 |
T |
|
| Q |
150 |
catttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
194 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||| |||||| |
|
|
| T |
41145 |
catttgcagtaattgttcagattaagaacgttgaagcagggcaat |
41101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 40897 - 40840
Alignment:
| Q |
316 |
tggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccactta |
373 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
40897 |
tggcctctaactctaatgaaaaagactacttgaagatggctttggaaattgccactta |
40840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 17337 - 17285
Alignment:
| Q |
135 |
tttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagca |
187 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17337 |
tttaacttcctttgccctttgcagtaatcattcagacgaagaacgttgaagca |
17285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 41060 - 40943
Alignment:
| Q |
244 |
tccatgcggcaactccataacgtgtcgttgtgtccatttggattt---tggaatgacctgcattga---tacgggcgctggcctctaactctaatgaaaa |
337 |
Q |
| |
|
|||||||||| || || |||||||||||||||| ||||| |||| ||||| |||||| |||| || ||| | |||||||||| |||||||||| |
|
|
| T |
41060 |
tccatgcggcgacatcacaacgtgtcgttgtgtctatttgcatttagttggaagtacctgcgttgactataggggtgatggcctctaattctaatgaaat |
40961 |
T |
|
| Q |
338 |
ggagtacttgaagatggc |
355 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40960 |
ggagtacttgaagatggc |
40943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 26791976 - 26792329
Alignment:
| Q |
21 |
gaactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgt |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26791976 |
gaactcgtaaaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgt |
26792075 |
T |
|
| Q |
121 |
gtattggatccaactttaacttcctttgccatttgcagtaatcatc----cagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacgg |
216 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || || |
|
|
| T |
26792076 |
gtattggttccaactttaatttcctttgccatttgcagtaatcatccagacagacgaagaacgttgaagcaaggca---------ttgtgcaagatatgg |
26792166 |
T |
|
| Q |
217 |
tatgggttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttgga---ttttggaatgacctgcattg---atacg |
310 |
Q |
| |
|
|||| |||| || |||||||| || |||||||||||| ||||||||||||| |||||| |||| | ||||||||| ||||||||| ||||| |
|
|
| T |
26792167 |
tatgccttgtgcagtatttgagtcgaatccatgcggcaattccataacgtgtcagtgtgtcagtttgtacatatttggaatgtcctgcattgactatacg |
26792266 |
T |
|
| Q |
311 |
ggcgctggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccactta |
373 |
Q |
| |
|
|| | |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
26792267 |
ggtgatggcctctaactctaatgaaaaaaactacttgaagatggctttggaaattgccactta |
26792329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 26777930 - 26777766
Alignment:
| Q |
21 |
gaactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgt |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
26777930 |
gaactcgtaaaatattcttaattaatgaaaaattagtatactacattctcaatttaataccaaactctcctaaatatatacgttatatgcatag--atgt |
26777833 |
T |
|
| Q |
121 |
gtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagca |
187 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
26777832 |
gtattggtttcaactttaacttcctttgccatttgcagtaatcgtccagacgaagaacgtagaagca |
26777766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 26834603 - 26834738
Alignment:
| Q |
48 |
aaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttccttt |
147 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
26834603 |
aaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattggttccaactttaactttcttt |
26834700 |
T |
|
| Q |
148 |
gccatttgcagtaatcatccagacgaagaacgttgaag |
185 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26834701 |
gccatttgcagtaatcgtccagacgaagaacgttgaag |
26834738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 26729406 - 26729547
Alignment:
| Q |
44 |
aatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttc |
143 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||| ||||||||||||| | |||||||||| ||| ||| | |||| ||||| ||||| ||| |
|
|
| T |
26729406 |
aatgaaaaattaatatactacatgctcaatttaataccaaactttcctaaatatatgctttatatgcatggatgtgtat-ttggttccaattttaatttc |
26729504 |
T |
|
| Q |
144 |
ctttgccatttgcagtaatcatccagacgaagaacgttgaagc |
186 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26729505 |
ctttgtcatttgcagtaatcgtccagacgaagaacgttgaagc |
26729547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 26745629 - 26745688
Alignment:
| Q |
135 |
tttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
194 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
26745629 |
tttaacttcctttgccctttgcagtaatcgtccagacgaagaacgttcaagcagggcaat |
26745688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 26745586 - 26745627
Alignment:
| Q |
44 |
aatgaaaaattagtttactacatgctcaatttaatcccaaac |
85 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
26745586 |
aatgaaaaattattatactacatgctcaatttaatgccaaac |
26745627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 2165 - 2496
Alignment:
| Q |
21 |
gaactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgt |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2165 |
gaactcgtaaaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatag--atgt |
2262 |
T |
|
| Q |
121 |
gtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatg |
220 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||| | |
|
|
| T |
2263 |
gtatcggttccaactttaacttcctttgccatttgtagtaatcatccagacgaagaacgttgaagcaaggca---------ttgtgcaagatatggtagg |
2353 |
T |
|
| Q |
221 |
ggttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttggat-tttggaatgacctgcattg---atacgggcgct |
316 |
Q |
| |
|
| |||||||||||||||| || ||||||||||||||||||||| || | | || |||||||||| |||||||| ||||||| | | |
|
|
| T |
2354 |
gattgttcaatatttgagtcgaatccatgcggcaactccataac-----------tctaat---atatttggaatgatctgcattgactatacgggtgat |
2439 |
T |
|
| Q |
317 |
ggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccactta |
373 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
2440 |
ggcctctaactctaatgaaaaaaactacttgaagatggctttggaaattgccactta |
2496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 21 - 373
Target Start/End: Complemental strand, 7648 - 7299
Alignment:
| Q |
21 |
gaactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgt |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7648 |
gaactcgtaaaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatatgt |
7549 |
T |
|
| Q |
121 |
gtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatg |
220 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
7548 |
gtattggttccaactttaacttcctttaccatttgcagtaattgtccagattaagaacgttgaagcagggcaa---------tgtgcaagagtcggtatg |
7458 |
T |
|
| Q |
221 |
ggttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttggatt---ttggaatgacctgcattg---atacgggcg |
314 |
Q |
| |
|
|||||||| | || |||||||||| || | ||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| | |
|
|
| T |
7457 |
cgttgttcacgggcattgccgaatccatgcggcgacatcgtaacgtgtcgttgtgtccatttgcatttagttggaagtacctgcattgactatacgggtg |
7358 |
T |
|
| Q |
315 |
ctggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccactta |
373 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
7357 |
atggcctctaactctaatgaaaaagactacttgaagatggctttggaaattgccactta |
7299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 20949 - 21093
Alignment:
| Q |
45 |
atgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttcc |
144 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
|
|
| T |
20949 |
atgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagata--tgtattggttccaactttaactttc |
21046 |
T |
|
| Q |
145 |
tttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggc |
191 |
Q |
| |
|
||||| ||||||||||||| || |||||| |||| |||||||||||| |
|
|
| T |
21047 |
tttgcaatttgcagtaatcgtcgagacgatgaacattgaagcaaggc |
21093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 17575 - 17691
Alignment:
| Q |
30 |
aaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggat |
129 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
17575 |
aaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattgatt |
17672 |
T |
|
| Q |
130 |
ccaactttaacttcctttg |
148 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17673 |
ccaactttaacttcctttg |
17691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 13042176 - 13042081
Alignment:
| Q |
95 |
tatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggca |
192 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13042176 |
tatataggttatatgcatagat--gtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggca |
13042081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 13050253 - 13050158
Alignment:
| Q |
95 |
tatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggca |
192 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13050253 |
tatataggttatatgcatagat--gtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggca |
13050158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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