View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_26 (Length: 365)
Name: NF14178_low_26
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 46941304 - 46941627
Alignment:
| Q |
22 |
tactagagtatgctactactgtttaaaataggattatcattaatgtattgacaacacagcatttccattcccc-tctgtatattttgtccttgttattaa |
120 |
Q |
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| T |
46941304 |
tactagagtatgctactactgtttaaaataggattatcattaatgtattgacaacacagcatttccattccccctctgtatattttgtccttgttattaa |
46941403 |
T |
|
| Q |
121 |
tatgatattatggtttattacatcaattccaatatcttaaaaagattagtgttaaaatgtgagtggtacaccaccagaccaagaatacttttatggtatt |
220 |
Q |
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| T |
46941404 |
tatgatattatggtttattacatcaattccaatatcttaaaaagattagtgttaaaatgtgagtggtacaccaccagaccaagaatacttttatggtatt |
46941503 |
T |
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| Q |
221 |
gagatttgaatatccagaagagggcactgcaattaatatgtacgttttgattttgttctgtgttcagaatatgtctatggtagacatggttacattaccc |
320 |
Q |
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| T |
46941504 |
gagatttgaatatccagaagagggcactgcaattaatatgtacgttttgattttgttctgtgttcagaatatgtctatggtagacatggttacattaccc |
46941603 |
T |
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| Q |
321 |
cacaactgactctatttttgttgc |
344 |
Q |
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| T |
46941604 |
cacaactgactctatttttgttgc |
46941627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 38943864 - 38943754
Alignment:
| Q |
202 |
agaatacttttatggtattgagatttgaatatccagaagagggcactgcaattaatatgtacg-ttttgattttgttctgtgttcagaatatgtctatgg |
300 |
Q |
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| T |
38943864 |
agaatactttcatggtattgagatttgaatatccaggagaaggcactgcaattaatacgcacgcttttgattttat--tgtgttcagaatattgctatgg |
38943767 |
T |
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| Q |
301 |
tagacatggttac |
313 |
Q |
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| T |
38943766 |
tagacatggttac |
38943754 |
T |
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Back To:
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