View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14178_low_27 (Length: 358)

Name: NF14178_low_27
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14178_low_27
NF14178_low_27
[»] chr3 (10 HSPs)
chr3 (11-343)||(24413515-24413850)
chr3 (178-343)||(24401109-24401274)
chr3 (172-343)||(24420111-24420282)
chr3 (30-154)||(24420388-24420515)
chr3 (175-343)||(24378272-24378440)
chr3 (102-142)||(41028956-41028996)
chr3 (110-154)||(53736206-53736250)
chr3 (102-149)||(905068-905115)
chr3 (96-141)||(16790462-16790507)
chr3 (105-149)||(49587014-49587057)
[»] chr5 (7 HSPs)
chr5 (102-149)||(20982233-20982280)
chr5 (102-149)||(10391278-10391325)
chr5 (102-149)||(13224354-13224401)
chr5 (102-149)||(26516223-26516270)
chr5 (103-149)||(7096225-7096271)
chr5 (106-142)||(29588809-29588845)
chr5 (262-334)||(42361605-42361677)
[»] scaffold0590 (1 HSPs)
scaffold0590 (102-149)||(1172-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (102-149)||(2756-2803)
[»] chr4 (8 HSPs)
chr4 (102-149)||(4191664-4191711)
chr4 (104-149)||(47970245-47970290)
chr4 (102-142)||(2980576-2980616)
chr4 (102-153)||(21157693-21157744)
chr4 (102-149)||(46415890-46415937)
chr4 (106-148)||(8130103-8130145)
chr4 (101-142)||(52645624-52645665)
chr4 (113-149)||(24160926-24160962)
[»] chr1 (7 HSPs)
chr1 (104-149)||(13037791-13037836)
chr1 (102-150)||(4202226-4202274)
chr1 (102-149)||(23370396-23370443)
chr1 (102-149)||(23373388-23373435)
chr1 (102-153)||(38651503-38651554)
chr1 (105-142)||(41638177-41638214)
chr1 (102-142)||(45975865-45975905)
[»] chr6 (8 HSPs)
chr6 (102-142)||(29249399-29249439)
chr6 (102-142)||(31668790-31668830)
chr6 (102-149)||(4247732-4247779)
chr6 (102-141)||(8010282-8010321)
chr6 (107-149)||(31461608-31461650)
chr6 (102-150)||(2727953-2728001)
chr6 (102-142)||(10452465-10452505)
chr6 (105-149)||(33259744-33259788)
[»] chr8 (5 HSPs)
chr8 (102-149)||(14482127-14482174)
chr8 (104-142)||(8536153-8536191)
chr8 (101-142)||(5290565-5290606)
chr8 (102-142)||(8629034-8629074)
chr8 (96-140)||(12972775-12972819)
[»] chr7 (8 HSPs)
chr7 (102-149)||(7244627-7244674)
chr7 (106-149)||(27481392-27481435)
chr7 (103-149)||(24973870-24973916)
chr7 (103-149)||(33894549-33894595)
chr7 (104-149)||(3610838-3610883)
chr7 (102-142)||(991995-992035)
chr7 (102-142)||(45078218-45078258)
chr7 (102-142)||(46213728-46213768)
[»] chr2 (6 HSPs)
chr2 (102-149)||(10190204-10190251)
chr2 (111-149)||(32848844-32848882)
chr2 (108-149)||(914012-914053)
chr2 (102-147)||(33197339-33197384)
chr2 (102-142)||(33267621-33267661)
chr2 (109-149)||(41033048-41033088)
[»] scaffold0654 (1 HSPs)
scaffold0654 (102-151)||(6733-6782)
[»] scaffold0014 (1 HSPs)
scaffold0014 (102-151)||(116652-116701)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 24413515 - 24413850
Alignment:
Q  11 aagaatatcagaactaattttatatactagaatggaattagta---caggcacatgcccactcaactttatacatagcttcgcccccgagcatgtatcat 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413515 aagaatattagaactaattttatatactagaatggaattagtagtgcaggcacatgcccactcaactttatacatagcttcgcccccgagcatgtatcat 24413614  T
Q  108 ataagtgcttacgtatgagctatttctataacaaaggataaactaataatccattattgtactgacgaatacagggctatcatgagatcaaattgctatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413615 ataagtgcttacgtatgagctatttctataacaaaggataaactaataatccattattgtactgacgaatacagggctatcatgagatcaaattgctatc 24413714  T
Q  208 ataaagaaggacaccaagctccttgtagatatgaggctaatatatatatggtgttgtttggagttgttcagattgtaatgtcattcataccggatctcca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24413715 ataaagaaggacaccaagctccttgtagatatgaggctaatatatatatggtgttgtttggagttgttcagattgtaatgtcgttcataccggatctcca 24413814  T
Q  308 taacatggcttgggtttcggttgttgctgcactaat 343  Q
    |||||||||||||||||| |||||||| ||||||||    
T  24413815 taacatggcttgggtttcagttgttgccgcactaat 24413850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 178 - 343
Target Start/End: Original strand, 24401109 - 24401274
Alignment:
Q  178 acagggctatcatgagatcaaattgctatcataaagaaggacaccaagctccttgtagatatgaggctaatatatatatggtgttgtttggagttgttca 277  Q
    |||||||||| |||||||||||||| ||||| || ||||| ||| | ||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  24401109 acagggctattatgagatcaaattgttatcacaaggaagggcacaatgctccttgtagctacgaggctaatatatatatggtgctgtttggagttgttca 24401208  T
Q  278 gattgtaatgtcattcataccggatctccataacatggcttgggtttcggttgttgctgcactaat 343  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24401209 gattgtaatgtcgttcataccggatctccataacatggcttgggtttcagttgttgccgcactaat 24401274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 24420282 - 24420111
Alignment:
Q  172 acgaatacagggctatcatgagatcaaattgctatcataaagaaggacaccaagctccttgtagatatgaggctaatatatatatggtgttgtttggagt 271  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||  | |||  | |||||| |  |||||||| |    
T  24420282 acgaatacagggctattatgaaatcaaattgctatcataaagaaggacaccaagctccttgtacttatggtggtaacttgtatatgatactgtttggact 24420183  T
Q  272 tgttcagattgtaatgtcattcataccggatctccataacatggcttgggtttcggttgttgctgcactaat 343  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420182 tgttcagattgtaatgtcgttcataccggatctccataacatggcttgggtttcggttgttgctgcactaat 24420111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 24420515 - 24420388
Alignment:
Q  30 ttatatactagaatggaattagta---caggcacatgcccactcaactttatacatagcttcgcccccgagcatgtatcatataagtgcttacgtatgag 126  Q
    ||||||||||||||| ||||||||   |||||||||| |||||||||||| |||||||||| |||||  |||||||| ||||||| ||||||||||| ||    
T  24420515 ttatatactagaatgaaattagtagtgcaggcacatgaccactcaactttctacatagctttgcccctaagcatgtaacatataaatgcttacgtataag 24420416  T
Q  127 ctatttctataacaaaggataaactaat 154  Q
    | ||||||||||||||||||||||||||    
T  24420415 caatttctataacaaaggataaactaat 24420388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 175 - 343
Target Start/End: Original strand, 24378272 - 24378440
Alignment:
Q  175 aatacagggctatcatgagatcaaattgctatcataaagaaggacaccaagctccttgtagatatgaggctaatatatatatggtgttgtttggagttgt 274  Q
    ||||||||||||| ||||| |||||||| ||||| || ||||| ||    ||||||||||| |||| || |||| | |||||| |  |||||||||||||    
T  24378272 aatacagggctattatgagttcaaattgttatcacaaggaagggcatggtgctccttgtaggtatgggggtaatttgtatatgatactgtttggagttgt 24378371  T
Q  275 tcagattgtaatgtcattcataccggatctccataacatggcttgggtttcggttgttgctgcactaat 343  Q
    |||||||||||||||||||||||||||||| |||| |||| | |||||||| |||||||||||| ||||    
T  24378372 tcagattgtaatgtcattcataccggatcttcatagcatgacatgggtttcagttgttgctgcaataat 24378440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 41028996 - 41028956
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  41028996 tatcatataagtgcttatgtataagctatttctataacaaa 41028956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 53736250 - 53736206
Alignment:
Q  110 aagtgcttacgtatgagctatttctataacaaaggataaactaat 154  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||    
T  53736250 aagtgcttacgtatgagttatttctataacaaaagataaaataat 53736206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 905115 - 905068
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaaagataaa 905068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 16790507 - 16790462
Alignment:
Q  96 agcatgtatcatataagtgcttacgtatgagctatttctataacaa 141  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  16790507 agcatttatcatataagtgcttatgtataagctatttttataacaa 16790462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 49587057 - 49587014
Alignment:
Q  105 catataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  49587057 catataagtgcttac-tataagctatttctataacaaaagataaa 49587014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 20982280 - 20982233
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  20982280 tatcatataagtgcttatgtataagctatttctataacaaaggataaa 20982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 10391278 - 10391325
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  10391278 tatcatataagtgcttacgtataagctatttttataacaaaagataaa 10391325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 13224354 - 13224401
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  13224354 tatcatagaagtgcttatgtataagctatttctataacaaaagataaa 13224401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 26516223 - 26516270
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  26516223 tatcatataagtgcttatgtataagctatttctaaaacaaaagataaa 26516270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 7096271 - 7096225
Alignment:
Q  103 atcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  7096271 atcatacaagtgcttatgtataagctatttctataacaaaagataaa 7096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 29588809 - 29588845
Alignment:
Q  106 atataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  29588809 atataagtgcttatgtataagctatttctataacaaa 29588845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 42361605 - 42361677
Alignment:
Q  262 tgtttggagttgttcagattgtaatgtcattcataccggatctccataacatggcttgggtttcggttgttgc 334  Q
    |||||||| |||||||| |  |||||||||||||||| || ||||| |||||||| | | |||| ||||||||    
T  42361605 tgtttggacttgttcaggtcataatgtcattcataccagacctccacaacatggcattgctttcagttgttgc 42361677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 1219 - 1172
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaa 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 2756 - 2803
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaa 2803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 4191664 - 4191711
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  4191664 tatcatataagtgcttatgtataagctatttctataacaaaagataaa 4191711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 47970245 - 47970290
Alignment:
Q  104 tcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  47970245 tcatataagtgcttatgtataagctatttctataacaaaagataaa 47970290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 2980616 - 2980576
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  2980616 tatcatataagtgcttatgtataagctatttctataacaaa 2980576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 21157693 - 21157744
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaactaa 153  Q
    ||||||||||||||||| |||| ||||||||  ||||||||| |||||||||    
T  21157693 tatcatataagtgcttatgtatcagctattttgataacaaagtataaactaa 21157744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 46415937 - 46415890
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||| ||||||||||||||| ||||||||| |||||||| ||||||    
T  46415937 tatcatctaagtgcttacgtataagctatttcaataacaaaagataaa 46415890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 8130103 - 8130145
Alignment:
Q  106 atataagtgcttacgtatgagctatttctataacaaaggataa 148  Q
    ||||||||||||||||||||| | ||||||||||||| |||||    
T  8130103 atataagtgcttacgtatgagttctttctataacaaaagataa 8130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 52645624 - 52645665
Alignment:
Q  101 gtatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
T  52645624 gtatcatataagtgtttatgtatgagctatttctgtaacaaa 52645665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 24160926 - 24160962
Alignment:
Q  113 tgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||| |||| |||||||||||||||||||||||||    
T  24160926 tgcttatgtataagctatttctataacaaaggataaa 24160962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 13037791 - 13037836
Alignment:
Q  104 tcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  13037791 tcatataagtgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 4202274 - 4202226
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaac 150  Q
    ||||||||||||||||| |||| || ||||||||||||||| |||||||    
T  4202274 tatcatataagtgcttaagtataagttatttctataacaaaagataaac 4202226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 23370443 - 23370396
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||||| ||||||||| |||||||||||| ||||| ||||||    
T  23370443 tatcatataagtacttacgtataagctatttctattacaaaagataaa 23370396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 23373435 - 23373388
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||| ||||||||||| ||||||||||||| |||| ||||||    
T  23373435 tatcatataactgcttacgtattagctatttctatatcaaaagataaa 23373388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 38651554 - 38651503
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaactaa 153  Q
    |||||| |||||||||| |||| ||||| |||||||||||| ||||||||||    
T  38651554 tatcatgtaagtgcttatgtataagctaattctataacaaaagataaactaa 38651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 41638177 - 41638214
Alignment:
Q  105 catataagtgcttacgtatgagctatttctataacaaa 142  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  41638177 catataagtgcttatgtattagctatttctataacaaa 41638214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 45975865 - 45975905
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  45975865 tatcatataagtgcttacacataagctatttctataacaaa 45975905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 29249399 - 29249439
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  29249399 tatcatataagtgcttatgtatcagctatttctataacaaa 29249439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 31668830 - 31668790
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  31668830 tatcatataagtgcttatgtataagctatttctataacaaa 31668790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 4247779 - 4247732
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||| |||||||||| |||| |||||||||||||||||| ||||||    
T  4247779 tatcatgtaagtgcttatgtataagctatttctataacaaaagataaa 4247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 8010282 - 8010321
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaa 141  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8010282 tatcatataagtgcttaggtataagctatttctataacaa 8010321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 31461608 - 31461650
Alignment:
Q  107 tataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||||| |||| |||||||||||||||||| ||||||    
T  31461608 tataagtgcttatgtataagctatttctataacaaaagataaa 31461650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 2728001 - 2727953
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaac 150  Q
    ||||||||||||||||| |||| ||||  |||||||||||| |||||||    
T  2728001 tatcatataagtgcttatgtataagctgcttctataacaaaagataaac 2727953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 10452505 - 10452465
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    |||||||| |||||||| |||| ||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaa 10452465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 33259744 - 33259788
Alignment:
Q  105 catataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||||||| |||| |||||||| ||||||||| ||||||    
T  33259744 catataagtgcttatgtataagctatttttataacaaaagataaa 33259788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 14482127 - 14482174
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| | |||||||||||||||| ||||||    
T  14482127 tatcatataagtgcttatgtataaactatttctataacaaaagataaa 14482174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 8536191 - 8536153
Alignment:
Q  104 tcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaa 8536153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 5290565 - 5290606
Alignment:
Q  101 gtatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  5290565 gtatcatacaagtgcttatgtataagctatttctataacaaa 5290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 8629034 - 8629074
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  8629034 tatcatataagtgcttatttataagctatttctataacaaa 8629074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 12972775 - 12972819
Alignment:
Q  96 agcatgtatcatataagtgcttacgtatgagctatttctataaca 140  Q
    ||||| ||||||||||||||||| |||| ||||||||| ||||||    
T  12972775 agcatttatcatataagtgcttatgtataagctatttcaataaca 12972819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 7244627 - 7244674
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  7244627 tatcatataagtgcttatgtataagctatttctatatcaaaagataaa 7244674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 27481435 - 27481392
Alignment:
Q  106 atataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||    
T  27481435 atataagtgtttatgtataagctatttctataacaaaggataaa 27481392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 24973870 - 24973916
Alignment:
Q  103 atcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||||||||| |||  |||||||||||||||||| ||||||    
T  24973870 atcatataagtgcttatgtaaaagctatttctataacaaaagataaa 24973916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 33894549 - 33894595
Alignment:
Q  103 atcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||| |||||||||| |||| |||||||||||||||||| ||||||    
T  33894549 atcatgtaagtgcttatgtataagctatttctataacaaaagataaa 33894595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 3610883 - 3610838
Alignment:
Q  104 tcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  3610883 tcatataagtgcttatgtataagctatttctacaacaaaagataaa 3610838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 991995 - 992035
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  991995 tatcatataagtgcttacgtataagttgtttctataacaaa 992035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 45078218 - 45078258
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  45078218 tatcatataagtgcttatgtataagctatttttataacaaa 45078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 46213728 - 46213768
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||  ||||||||||||||||||    
T  46213728 tatcatataagtgcttatgtaaaagctatttctataacaaa 46213768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 10190204 - 10190251
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||||||| |||| | |||||| ||||||||||||||||    
T  10190204 tatcatataagtgcttatgtataaactatttttataacaaaggataaa 10190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 32848844 - 32848882
Alignment:
Q  111 agtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  32848844 agtgcttacgtattagctatttctataacaaaagataaa 32848882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 914012 - 914053
Alignment:
Q  108 ataagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  914012 ataagtacttacgtatgaactatttctataacaaaagataaa 914053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 33197384 - 33197339
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggata 147  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||    
T  33197384 tatcatataagtgcttatctataagctatttctataacaaaagata 33197339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 33267661 - 33267621
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaa 142  Q
    ||||||||||||||||| |||| | ||||||||||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttctataacaaa 33267621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 41033088 - 41033048
Alignment:
Q  109 taagtgcttacgtatgagctatttctataacaaaggataaa 149  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  41033088 taagtgcttatgtataagctatttctataacaaaagataaa 41033048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 6782 - 6733
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaact 151  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||    
T  6782 tatcatataagtgcttatgtataaactatttctataacaaaaaataaact 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 116701 - 116652
Alignment:
Q  102 tatcatataagtgcttacgtatgagctatttctataacaaaggataaact 151  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||    
T  116701 tatcatataagtgcttatgtataaactatttctataacaaaaaataaact 116652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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