View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_28 (Length: 356)
Name: NF14178_low_28
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 28915699 - 28916020
Alignment:
| Q |
13 |
atctacatggatttggatataacacagtta----ctgcatgtacacagta--attgatctgcaccaaccaatctgaagcgaaaggtcaatatctgactta |
106 |
Q |
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| T |
28915699 |
atctacatgaatttggatataacacagttagttactgcatgtacacaatataattgatctgcaccaaccaatctgaagcgaaccgtcaagatcttactta |
28915798 |
T |
|
| Q |
107 |
aaacattttattttgattataataatctaaaaccaatctaaatgtacatctatttggtattagtttgtagggttatggaccaggtggtcccatgcatcac |
206 |
Q |
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| T |
28915799 |
aaactttttattttgattataataatctaaaaccaatctaaatgtacatctatttggtattagtttgtagggttatggaccatgtggtcccatgcatcac |
28915898 |
T |
|
| Q |
207 |
ttgtgcaaaaaacgtactctcaccatgaaattgtgagcttgatccaaagcataaagtaggaaggacacagtcacatgcacatgaaaaaagtgggaaaatg |
306 |
Q |
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| T |
28915899 |
ttgtgcaaaaaacgtactctcaccatgaaattgtgagcttgatccaaagcataaagtaggaaggacacagtcacatgcacatgaaaaaagtgggaaaatg |
28915998 |
T |
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| Q |
307 |
gcttcgttcttccaatacccaa |
328 |
Q |
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| T |
28915999 |
gcttcgttcttccaatacccaa |
28916020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 6561728 - 6561474
Alignment:
| Q |
13 |
atctacatggatttggatataacacagttactgcatgtacacagtaattgatctgcaccaaccaatctgaagcgaaaggtcaatatctgacttaaaacat |
112 |
Q |
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| T |
6561728 |
atctacatggatttggatataacacatttattgcgtggacacggtaattgatctgcaccaaccgatctcaagcaaacggtcaagatcttacttaaaactt |
6561629 |
T |
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| Q |
113 |
tttattttgattataataat---ctaaaaccaatctaaatgtacatctatttggtattagtttgtagggttatggaccaggtggtcccatgcatcacttg |
209 |
Q |
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| T |
6561628 |
tttattttgattataataataatctaaaaccaatctaagtgtacatccatttgttattagtttgtagggttatggagcaggtggtcccatgcatcacttg |
6561529 |
T |
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| Q |
210 |
tgcaaaaaacgtactctcaccatgaaattgtgagcttgatccaaagcataaagtag |
265 |
Q |
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| T |
6561528 |
tgc-gaaaacgtactctcaccataaaattgtgagcttgatccaaagcataaagtag |
6561474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 6561431 - 6561369
Alignment:
| Q |
266 |
gaaggacacagtcacatgcacatgaaaaaagtgggaaaatggcttcgttcttccaatacccaa |
328 |
Q |
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| T |
6561431 |
gaaggacacagtcacatgcacatgaaaaaagtgggaaaatggcttcgttcttccaatgcccaa |
6561369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 7805717 - 7805797
Alignment:
| Q |
20 |
tggatttggatataacacagttactgcatgtacacagtaattgatctgcaccaaccaatctgaagcgaaaggtcaatatct |
100 |
Q |
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| T |
7805717 |
tggatttggatataacacagttattgcatccacgtagtaattgatctgtagcattcaatctgaagtgaatggtcaaaatct |
7805797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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