View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_34 (Length: 314)
Name: NF14178_low_34
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 25116283 - 25116011
Alignment:
| Q |
21 |
atcagacacctctgcacttatcaaacctttgttaaattctggatcaagatttttggcaatgagatcatgatcaccttgcaaatcgttggccttctcggta |
120 |
Q |
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| T |
25116283 |
atcagacacctctgcactcatcaaacctttgttaaattctggatcaagatttttggcaatgagatcatgatcaccttgcaaatctttggccttctcggta |
25116184 |
T |
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| Q |
121 |
ctcagtccgacaaacaaattcctaatgaaaaagcatttaaaagattatcaatttcaagaaattcaaacaccattatcatcaatattgaattcaactaaaa |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
25116183 |
ctcagttcgacaaacaaattcctaatgaaaaagcatttaaaagattatcaatttcaagaaattcaaacaccatt---atcaatgttgaattcaactaaaa |
25116087 |
T |
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| Q |
221 |
gggaatatatctatcgagaaagaaaatactaaatctcaattgcattatgtagaacatactatttataatgaggatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |
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| T |
25116086 |
tggaatatatctatcgagaaagaaaatactaaatctcaattgcattatgtaaaacaaactatttataattaggatg |
25116011 |
T |
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