View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14178_low_37 (Length: 309)

Name: NF14178_low_37
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14178_low_37
NF14178_low_37
[»] chr1 (1 HSPs)
chr1 (5-293)||(32285499-32285787)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 32285787 - 32285499
Alignment:
Q  5 tgggtagattatactgtttaacagtcttcgttgggtatccctgaggatgggatcatgacatcacaacttcttgagaggctatatttggatatacggacta 104  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32285787 tgggtatattatattgtttaacagtcttcgttgggtatccctgaggatgggatcatgacatcacaccttcttgagaggctatatttggatatacggacta 32285688  T
Q  105 cggatatagatagtgtaaatgaaaccaaaaaatctgccactgttttaccgaaggtatgtctgttatataagttgtactttttgctgagtatgacatgtta 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32285687 cggatatagatagtgtaaatgaaaccaaaaaatctgcctctgttttaccgaaggtatgtctgttatataagttgtactttttgctgagtatgacatgtta 32285588  T
Q  205 gtgtccaacacctacacaacaccagcacatgtgatcacattgaatcacttatattttcttaaattgttattagtatctacacattggta 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32285587 gtgtccaacacctacacaacaccagcacatgtgatcacattgaatcacttatattttcttaaattgttattagtatctacacattggta 32285499  T

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