View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14178_low_39 (Length: 291)

Name: NF14178_low_39
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14178_low_39
NF14178_low_39
[»] chr4 (1 HSPs)
chr4 (11-291)||(48115231-48115516)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 48115516 - 48115231
Alignment:
Q  11 cagagaatattgatcgtggcaagtaaagacatataattatgtgaatcgtgtggtagatccatggtattgttttgatttggttaatgattgagattttatt 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48115516 cagagaatattgatcgtggcaagaaaagacatataattatgtgaatcgtgtggtagatccatggtattgttttgatttggttaatgattgagattttatt 48115417  T
Q  111 tagtggtttgtttggtatcgaaagatggacaaaacatgtgaggaagaagaaattcagagtacctaggaataatgaccgaattactta----cttaggcaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  48115416 tagtggtttgtttggtatcgaaagatggacaaaacatgtgaggaagaagaaattcagagtacctaggaataatgaccgaattacttacttacttaggcaa 48115317  T
Q  207 acaataaggaatacagtcacatggattttctgtccaactcatatagctttaaatc-tttttattctgtttcattgagaagaaaagt 291  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48115316 acaatagggaatacagtcacatggattttctgtccaactcatatagctttaaatcttttttattctgtttcattgagaagaaaagt 48115231  T

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