View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_40 (Length: 289)
Name: NF14178_low_40
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 2491790 - 2492039
Alignment:
| Q |
19 |
aaaatttatattagcttggcttccttattagacatcacaaggaaaataagtgtagccatataaaaatatcttagagctgcttttgaacaagcatctacag |
118 |
Q |
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| T |
2491790 |
aaaacttatattagcttggcttccttattagacatcacaaggaaagtaagtgtagccatataaaaatatcttagagctgcttttcaacaagcatctacag |
2491889 |
T |
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| Q |
119 |
ttagnnnnnnngttaaaatgatcttccagtaatttcaagtcttttaataatagcttctcatgtaagttaacatcttaacttgtaaacctccgcgtttaac |
218 |
Q |
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| T |
2491890 |
ttagaaaaaaagttaaaatgatcttccagtaatttcaagtcttttaataatagcttctcatgtaagttaacatcttaacttgtaaacctccgcgtttaac |
2491989 |
T |
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| Q |
219 |
tcctatataaaaatacatattttcctgtaaagacattcttataagttaaaga |
270 |
Q |
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| T |
2491990 |
tcctatat--aaatacagattttcctgtaaagacattcttataagttaaaga |
2492039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 2494960 - 2495028
Alignment:
| Q |
11 |
cacagagaaaaatttatattagcttggcttccttattagacatcacaaggaaaataagtgtagccatat |
79 |
Q |
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| T |
2494960 |
cacaaagaaaagcttatattagattctcttccttataagatatcacaaggaaactaagtctagccatat |
2495028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 2495102 - 2495150
Alignment:
| Q |
152 |
ttcaagtcttttaat-aatagcttctcatgtaagttaacatcttaactt |
199 |
Q |
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|||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
2495102 |
ttcaagtcttttaaacaatagcttgtcatataagttaacatcttaactt |
2495150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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