View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_42 (Length: 266)
Name: NF14178_low_42
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_42 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4508 - 4272
Alignment:
| Q |
1 |
attagaaatatgtcctagcctacaatggatgcagatcgacaaagaatcggttcggcagtgggttgagttgaaacatgatttgtatttgatgatcatgaat |
100 |
Q |
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| T |
4508 |
attagaaatatgtcctagcctacaatggatgcagattgacaaagaaccggttcggcagtgggttgagttgaaacatgatttgtatttgatgatcatgaat |
4409 |
T |
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| Q |
101 |
ccaagtgtagatgaattgtatacttaacctactacctggtcagttatctctttcaccatccgacaattgagtcaacatgtctccaaacctcaaccaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4408 |
ccaagtgtagatgaattgtatacttaacctactacctggtcagttatctctttcaccatccgacaattgagtcaacatgtctccaaacctcaaccaacaa |
4309 |
T |
|
| Q |
201 |
gttcattcactaccaggccgccatcagaagattacag |
237 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
4308 |
gttcattcactaccaggccaccatcagaagattacag |
4272 |
T |
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