View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_5 (Length: 610)
Name: NF14178_low_5
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 39782371 - 39781758
Alignment:
| Q |
1 |
ataccagggtctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39782371 |
ataccagggtctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttcaccatgatacttttctaattcaa |
39782272 |
T |
|
| Q |
101 |
cggtatagcgtttgatgaaccatc-atcataagccagatggacaattgaagccaaatctttt--------------gta-cccaaatgaagcataaaagt |
184 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
39782271 |
cggtatagcgtttgatgaaccatccatcataagccagatggacaattgaagccaaatctttttgtaccttggaaatgtaacccaaatgaagcataaaagt |
39782172 |
T |
|
| Q |
185 |
gaccggatgcagttttgccgcccaggc----gcatttcatggttgaaatgttccaacatctgtaatagtgcaataaaaacatggtcttacaagtttagtt |
280 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782171 |
gaccggatgcagttttgccgcccaggccggcgcatttcacggttgaaatgttccaacatctgtaatagtgcaataaaaacatggtcttacaagtttagtt |
39782072 |
T |
|
| Q |
281 |
atacttaaccgtggtaattgtgggttctgtttcggtacaaaccatttttcttacgatatagttgttcagtcaaagtcataaaaaatgagattttcccatt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39782071 |
atacttaaccgtggtaattgtgggttctgtttcggtacaaaccatttttcttacgatatagttgttcagtcaaaatcataaaaaatgagattttcccatt |
39781972 |
T |
|
| Q |
381 |
attttttgttgacaacgctactactttttgtacaatctaatgaattattttttctatttcttgctatacaagtatttatgtaaaaaccttcttttctaat |
480 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39781971 |
attttttgttgacaacgctactacttttcgtacaatctaatgaattattttttctatttcttgctatgcaagtatttatgtaaaaaccttcttttctaat |
39781872 |
T |
|
| Q |
481 |
ttccttgtatcatttcttatttctaatttttgtttttggataccggatatacataagttttctcgttcagagtagtcccgtcagctatgttcacttcttt |
580 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39781871 |
ttccttgtatcatttcttatttctattttttgtttttggataccggatatccataagttttctcgttcagagtagtcccgtcagctatgttcacttcttc |
39781772 |
T |
|
| Q |
581 |
tccacatgaatttg |
594 |
Q |
| |
|
||||| |||||||| |
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| T |
39781771 |
tccacgtgaatttg |
39781758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 39788825 - 39788572
Alignment:
| Q |
4 |
ccagggtctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaacgg |
103 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||| |
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|
| T |
39788825 |
ccagggtctaaccttgccaaagcttcagggtcccatgatgatggcacagcttctttgacatgatcgtggagttcaccatgatatctttctaattcaacgg |
39788726 |
T |
|
| Q |
104 |
tatagcgtttgatgaacca-tcatcataagccagatggacaattgaagccaaatcttttgta--------------cccaaatgaagcataaaagtgacc |
188 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |||||| |||| |||||| | ||||||||||||| |||||||||| |
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|
| T |
39788725 |
tatagcgtttgatgaaccagccatcataagcaagatggacgattgaatccaattcttttaaaccttgaaaacatatcccaaatgaagcacaaaagtgacc |
39788626 |
T |
|
| Q |
189 |
ggatgcagttttgccgcccaggcgcatttcatggttgaaatgttccaacatctg |
242 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||||||| |||||||| |
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|
| T |
39788625 |
ggatgcaattttgccagacaggcgcatttcacggttgaaatgttgtaacatctg |
39788572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 39793836 - 39793525
Alignment:
| Q |
11 |
ctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaacggtatagcg |
110 |
Q |
| |
|
||||||||| || ||| ||| ||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||| |
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| T |
39793836 |
ctaaccttgtcaaggccccagcgtcccataatgatggcacaacttctttgacatgatcatggagttgaccatgatacttttctaattcaacagcatagcg |
39793737 |
T |
|
| Q |
111 |
tttgatgaacc-atcatcataagccagatggacaattgaagccaaatcttttgt--------------acccaaatgaagcataaaagtgaccggatgca |
195 |
Q |
| |
|
||||||||||| | |||||||||| ||||||| |||||| |||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
39793736 |
tttgatgaaccaaccatcataagcaagatggatgattgaatccaattcttttgtaccgtgaaaatgcaacccaaatgaagcacaaaagtgaccggatgca |
39793637 |
T |
|
| Q |
196 |
gttttgccgcccaggcgcatttcatggttgaaatgttccaacatctgtaatagtgcaataaaaacatggtcttacaagt-ttagttatacttaaccgtgg |
294 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| |||||||| || | || |||| ||||| ||||| |||| ||| ||||||||| | | || |
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|
| T |
39793636 |
gtttttccatccaggcgcatttcatggttgaaatgttgtaacatctgaaacaacacattaaagacatgatcttaaaagtgttaattatacttagcggcgg |
39793537 |
T |
|
| Q |
295 |
taattgtgggtt |
306 |
Q |
| |
|
||||||| |||| |
|
|
| T |
39793536 |
taattgtaggtt |
39793525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 39776065 - 39775953
Alignment:
| Q |
10 |
tctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaacggtatagc |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| || | ||||| |
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|
| T |
39776065 |
tctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagc |
39775966 |
T |
|
| Q |
110 |
gtttgatgaacca |
122 |
Q |
| |
|
||||||||||||| |
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|
| T |
39775965 |
gtttgatgaacca |
39775953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 562
Target Start/End: Complemental strand, 39788411 - 39788318
Alignment:
| Q |
469 |
ttcttttctaatttccttgtatcatttcttatttctaatttttgtttttggataccggatatacataagttttctcgttcagagtagtcccgtc |
562 |
Q |
| |
|
|||| ||||||||||||| |||||| |||| ||||| | ||| | |||||||| || || ||||||||||||| |||||||||||| |||| |
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|
| T |
39788411 |
ttctattctaatttccttatatcatctcttgattctattctttttctttggatataagaaatccataagttttctcattcagagtagtctcgtc |
39788318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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