View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_6 (Length: 609)
Name: NF14178_low_6
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_6 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 12 - 587
Target Start/End: Complemental strand, 37050255 - 37049674
Alignment:
| Q |
12 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggtaagttaatggattttgaaatgataattcagtaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050255 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggtaagttaatggattttgaaatgataattcagtaa |
37050156 |
T |
|
| Q |
112 |
ataaatcaggaaatttcatttcaacaataagtacaggttataaaaaatatgaggaaagaacaaatgtgttttactgaggcttaggtgtgtcatttgtaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050155 |
ataaatcaggaaatttcatttcaacaataagtacaggttataaaaagtaggaggaaagaacaaatgtgttttactgaggcttaggtgtgtcatttgtaat |
37050056 |
T |
|
| Q |
212 |
gtgttattttctgatatatttaccttttcttgtgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050055 |
gtgttattttctgatatatttaccttttcttgtgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttc |
37049956 |
T |
|
| Q |
312 |
taagttcaaatcatggtccatgagagctggattaaggaaaatttaatatatactttgtactacaaaaataccatctagttggttgaggaacttccatttc |
411 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37049955 |
taagttcaaatcatggtcgatgagagctggattaaggaaaatttaatatatactttgtactacaaaaataccatctagttggttgaggaacttccatttc |
37049856 |
T |
|
| Q |
412 |
ctattcttt------taccatttctttgtgttttcctttcttgatatgttgggataagaacatgaaaactagcaagatatgtaagattcaattttccctc |
505 |
Q |
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||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37049855 |
ctattctttctttgatcacgtttctttgtgttttcctttcttgatatgttgggataagaacatgaaaactagcaagatatgtaagattcaattttccctc |
37049756 |
T |
|
| Q |
506 |
attttgttgtagagatatgtatggtttactgatttggtttgtttgaatcaacaaatcttttcattaagtgttctggcagtca |
587 |
Q |
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| T |
37049755 |
attttgttgtagagatatgtattgtttactgatttggtttgtttgaatcaacaaatcttttcattaagtgttctggcagtca |
37049674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 8690696 - 8690768
Alignment:
| Q |
243 |
gtgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttctaag |
315 |
Q |
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| T |
8690696 |
gtgcagatgtggattgcaaaggcagaatatgatgaatctggtccatcaattgtccacagaaagtgcttctaag |
8690768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8690121 - 8690185
Alignment:
| Q |
14 |
gagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
78 |
Q |
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||||| || |||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| |
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| T |
8690121 |
gagagaaaatacagtgtctggatcggaggttccatcttggcatctcttagcaccttccagcaggt |
8690185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 68734 - 68801
Alignment:
| Q |
12 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggta |
79 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||| |
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| T |
68734 |
cagagaggaagtatagtgtctggattggaggctccattttggcttccctcagcaccttccaacaggta |
68801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 69196 - 69267
Alignment:
| Q |
244 |
tgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttctaag |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||| || || ||||| || ||||||||||||||||||| |
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| T |
69196 |
tgcagatgtggattgcaaaggctgaatatgatgaatcaggcccttcaattgttcacaggaaatgcttctaag |
69267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 41388877 - 41388943
Alignment:
| Q |
244 |
tgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgctt |
310 |
Q |
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| T |
41388877 |
tgcagatgtggattgcaaaggccgagtacgatgaatctggtccttcaattgtacacaggaaatgctt |
41388943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 1261918 - 1261853
Alignment:
| Q |
14 |
gagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggta |
79 |
Q |
| |
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|||||||||||||||||||||||||| || || || |||||||| ||||| || || ||||||||| |
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| T |
1261918 |
gagaggaagtacagtgtctggattggtgggtctatcttggcatcactcagtacctttcaacaggta |
1261853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 58914 - 58842
Alignment:
| Q |
242 |
tgtgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttctaa |
314 |
Q |
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|||||||||||||||||||||||| || |||||||| ||||| |||||||| || || |||||||| |||||| |
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| T |
58914 |
tgtgcagatgtggattgcaaaggctgagtatgatgagtctggaccatcaattgtgcataggaaatgtttctaa |
58842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 59072 - 59008
Alignment:
| Q |
14 |
gagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
78 |
Q |
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||||| |||||||||||||||||||| ||||| || |||||||| || ||||| ||||||||||| |
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| T |
59072 |
gagagaaagtacagtgtctggattggtggttctatcttggcatccctaagcaccttccaacaggt |
59008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 43646941 - 43646875
Alignment:
| Q |
12 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
78 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || || | || |||||||| |||||||| ||||| |
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| T |
43646941 |
cagagagaaagtacagtgtctggattggaggatcaatccttgcttctctcagtactttccagcaggt |
43646875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 43646787 - 43646710
Alignment:
| Q |
244 |
tgcagatgtggattgcaaaggcagaatatgatgaatctgggccatcaatagtacacaggaaatgcttctaagttcaaa |
321 |
Q |
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||||||||||||| | |||| ||||||||||| ||||| ||||| || || |||||||| ||||||||||| |||| |
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| T |
43646787 |
tgcagatgtggatatccaagggtgaatatgatgagtctggtccatccattgtccacaggaagtgcttctaagtccaaa |
43646710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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