View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_61 (Length: 218)
Name: NF14178_low_61
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5850023 - 5849819
Alignment:
| Q |
1 |
gtgttagacagttgaatctctatgacatagatcaaataggtaattaatgaatgtgattatgtcgttgcctcaaagcaacacattgtataactcgagtaca |
100 |
Q |
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| T |
5850023 |
gtgttagacagttgaatctctatgacatagatcaaataggtaattaatgaatgtgattatgtcgttgcctgaaagcaacacattgtataactcgagtaca |
5849924 |
T |
|
| Q |
101 |
ttatcaaataattaagtcagagttgctccatatgtgtttgaatgaaatgaaaaataagcatgagttctcaaatttttgtaaatggatgtggttaaagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849923 |
ttatcaaataattaagtcagagttgctccatatgtgtttggatgaaatgaaaaataagcatgagttctcaaatttttgtaaatggatgtggttaaagaag |
5849824 |
T |
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| Q |
201 |
ttagt |
205 |
Q |
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||||| |
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| T |
5849823 |
ttagt |
5849819 |
T |
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