View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_62 (Length: 218)
Name: NF14178_low_62
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_62 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 1415065 - 1414860
Alignment:
| Q |
13 |
tgaaatcttcatcttttccatttagatccaaaacttcaaattcttttgatcatggctgatgtatgatccatatactttctttgattttctagtgacaaat |
112 |
Q |
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| T |
1415065 |
tgaaatcttcatcttttccatctagacccaaaacttcaaattcttttgatcatggctgatgtatgatccatatattttctttgattttctagtgacagat |
1414966 |
T |
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| Q |
113 |
atttatcctacatgtttactaactctttattagtcaaaacaannnnnnnnnnnnngataatacaaaatagttgtcgtcgaaacaaatgagcaagtgtaca |
212 |
Q |
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| T |
1414965 |
atttatcctacatttttactaactcttttttagtcaaatcaattttttccttcttgataatacaaaatagttgtcgtcgaaacaaatgagcaagtgtaca |
1414866 |
T |
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| Q |
213 |
tagtca |
218 |
Q |
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|||||| |
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| T |
1414865 |
tagtca |
1414860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 1421403 - 1421234
Alignment:
| Q |
40 |
ccaaaacttcaaattcttttgatcatggctgatgtatgatccatatactttcttt-gattttctagtgacaaatatttatcctaca-tgtttactaactc |
137 |
Q |
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||||||||||||||||||||||||| ||||| | |||||||||||| ||| ||| |||||||||||||| ||||||||||||| | | ||||||||||| |
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| T |
1421403 |
ccaaaacttcaaattcttttgatcagggctgcagaatgatccatatattttttttcgattttctagtgaccaatatttatcctatattttttactaactc |
1421304 |
T |
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| Q |
138 |
tttattagtcaaaacaannnnnnnnnnnnngataatacaaaatagttgtcgtcgaaacaaatgagcaagt |
207 |
Q |
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| T |
1421303 |
tttattagtcaaatcaattttttccttcttgataataaaaaatagttgttgtcgaaacaaatgagcaagt |
1421234 |
T |
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