View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_65 (Length: 215)
Name: NF14178_low_65
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_65 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1415294 - 1415507
Alignment:
| Q |
1 |
tttgtttgaatttcttacagacatatatttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaagtactaa |
100 |
Q |
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| T |
1415294 |
tttgtttgaatttcttacaaacatatatttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaaatactaa |
1415393 |
T |
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| Q |
101 |
tttgacaaataaatgcgacccatattcatttatctttttaagatagacttttctacaaactcaaagttttgacacgcaaaaaatggaatgtcaaagggag |
200 |
Q |
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| T |
1415394 |
tttgacaaataaatgtgacccgtattcatttatctttttaagatatacttttctacaaacgcaaagttttgacacgcaaagaatggaatgtc-aagggag |
1415492 |
T |
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| Q |
201 |
tgacctgacagtcat |
215 |
Q |
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| T |
1415493 |
tgacctgacagtcat |
1415507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 1421681 - 1421849
Alignment:
| Q |
25 |
atatttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaagtactaatttgacaaataaatgcgacccata |
124 |
Q |
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||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||| ||||||||||| |
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| T |
1421681 |
atatttgccctatcttcttaaccaattctttgttaataatatctgatttttccttcttgacaatactaagcactaatatgtcaaataattgcgacccata |
1421780 |
T |
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| Q |
125 |
ttcatttatctttttaagatagacttttct-acaaactcaaagttttgacacgcaaaaaatggaatgtcaa |
194 |
Q |
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| T |
1421781 |
ttca--tatctttttaagatatacttttctaacaaactgaaagttttcacacgtaaagaagggaatgtcaa |
1421849 |
T |
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