View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_9 (Length: 561)
Name: NF14178_low_9
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 28975985 - 28975439
Alignment:
| Q |
1 |
aacagaatgaaacaaattatccaaccattatgaaaaaactaaagttttagatttatgtttattgtactccaaatcacaagatttatcatttattcattta |
100 |
Q |
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| T |
28975985 |
aacagaatgaaacaaattatccaaccattatgaaaaaactaaagctttagatttatgtttattgtactccaactcacaagatttatcatttattcattta |
28975886 |
T |
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| Q |
101 |
aatcaacaataatcttaaatgaaggattcatcagcaaattaagatt-atgaataaaaccatgtaaaaagtataaacaaaaaagaaacagtttatataagt |
199 |
Q |
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| T |
28975885 |
aatcaacaataatcttaaatgaaggattcatcagcaaattaagatttatgaataaaaccatgtaaaaggtataaacaaaaaagaaacagtttatataagt |
28975786 |
T |
|
| Q |
200 |
tcagagaccaaaagatattttctatacatcaaataatacaatggcacttgcctgatcccaggttttcagtgaaatcatatctgcatcagcggcaaaccaa |
299 |
Q |
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| T |
28975785 |
tcagagaccaaaagatattttctatacatcaaataatacaatggcacttgcctgatcccaggttttcagtgaaatcatatctgcatcagcggcaaaccaa |
28975686 |
T |
|
| Q |
300 |
gcttccatcctgcatatataccattgcagcacttcatgggaaagtccttgttgcctgcagttaacatagtcaattacactgatagattgaaacgtaaagc |
399 |
Q |
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| T |
28975685 |
gcttccatcctgcatatataccattgcagcacttcatgggaaagtccttgttgcctgcagttaacatagtaaattacactgatagattgaaacgtaaagc |
28975586 |
T |
|
| Q |
400 |
ctcaatgattgtacatttattctcttaatctctaccttagttgtggatgcctatccagcacaattgaaatcgcttcagaaactgaaatgtcctcaggatg |
499 |
Q |
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| T |
28975585 |
ctcaatgattgtacatttattctcttaatctctaccttagttgtggatgcctatccagcacaattgaaatcgcttcagaaactgaaatgtcctcaggatg |
28975486 |
T |
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| Q |
500 |
ctcatccctcactttccctgtctgcggttaatcacaagggtataaaat |
547 |
Q |
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| T |
28975485 |
ctcatccctcactttccctgtctgcagtt-atcacaagggtataaaat |
28975439 |
T |
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