View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14179_low_1 (Length: 509)
Name: NF14179_low_1
Description: NF14179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14179_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 37201495 - 37201982
Alignment:
| Q |
19 |
cactaagtaccaaaaactactatctttaatagtagcaaagcggacggagtgagtaaagcaagagcccctgccctttgggcttggtccatttgttagttgt |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201495 |
cactaagtaccaaaaactactatctctaatagtagcaaagcggacggagtgagtaaagcaagagcccctgccctttgggcttggtccatttgttagttgt |
37201594 |
T |
|
| Q |
119 |
gatacaactaggagggggtagagggtgcggggggcgacagattaaggtaaacctgtaatcttgactacaataattaaacaaagttttgtactatgtaatc |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201595 |
gatacaactaggaggggatagagggtgcggggggcgacagattaaggtagacctgtaatcttgactacaataattaaacaaagttttgtactatgtaatc |
37201694 |
T |
|
| Q |
219 |
gtaaccattgcataatagaaaactacagtagacaacagtcactctgcgactgcagtccaaggtgtagaacatgctaggatagttagagttttgttattgt |
318 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37201695 |
gtaaccattgcataatagaaaactacaatagacaacagtcactctgcgactgcagtccaaggtgtagcacatgctaggatagttagagttttgttattgt |
37201794 |
T |
|
| Q |
319 |
tagtcaatttggaattagttaggagttagttactcaattagttgtgcagctgggttctattaataacactaacactattgtgtacataattcaatatctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
37201795 |
tagtcaatttggaattagttaggagttagttactcaattagttgtgcagctgggttctattaataacactaacattattgtgtacaaaattcaatatctt |
37201894 |
T |
|
| Q |
419 |
ttatcaatctataatatatgattccttaatgagcttttatctcaatgtgtattcctatgctctctttctctcctatgagtattatcta |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
37201895 |
ttatcaatctataatatatgattccttaatgagcttttatctcaatgtgtattcctatgctctctttctctcctgtgagtatgatcta |
37201982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 5209109 - 5209145
Alignment:
| Q |
316 |
tgttagtcaatttggaattagttaggagttagttact |
352 |
Q |
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| T |
5209109 |
tgttagtcaatttggaattagttaggagttaattact |
5209145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 2743485 - 2743531
Alignment:
| Q |
85 |
cctgccctttgggcttggtccatttgttagttgtgatacaactagga |
131 |
Q |
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| T |
2743485 |
cctgccctttgggcttggcccatttgtttgttgggttacaactagga |
2743531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 15846753 - 15846712
Alignment:
| Q |
204 |
ttgtactatgtaatcgtaaccattgcataatagaaaactaca |
245 |
Q |
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| T |
15846753 |
ttgtactatgtaatcttaagcattgcataatagaaaattaca |
15846712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 41934087 - 41934059
Alignment:
| Q |
334 |
tagttaggagttagttactcaattagttg |
362 |
Q |
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| T |
41934087 |
tagttaggagttagttactcaattagttg |
41934059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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