View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14179_low_3 (Length: 238)
Name: NF14179_low_3
Description: NF14179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14179_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37555745 - 37555967
Alignment:
| Q |
1 |
gtatgattggtcagcttataggtccttgtttcagcttgttcaggattgcaaacttaagttacaagctataatgtcatttcatcaatgtggagggaatatt |
100 |
Q |
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| T |
37555745 |
gtatgattggtcagcttataggtccttgtttcagcttgttcaggattgcaaacttaagttacaagctataatgtcatttcatcaatgtggagggaatatt |
37555844 |
T |
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| Q |
101 |
ggagattctgtttccattccattacctaaatgggtacttgaagttggtgaatcaaatcctgatatcttttacatcaacagttcaggtttcatgaataaag |
200 |
Q |
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| T |
37555845 |
ggagattctgtttccattccattacctaaatgggtacttgaagttggtgaatcaaatcctgatatcttttacaccaatagttcaggtttcatgaataaag |
37555944 |
T |
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| Q |
201 |
aatgtatttcactgggtgtggat |
223 |
Q |
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| T |
37555945 |
aatgtatttcactgggtgtggat |
37555967 |
T |
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Back To:
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 15502543 - 15502654
Alignment:
| Q |
62 |
caagctataatgtcatttcatcaatgtggagggaatattggagattctgtttccattccattacctaaatgggtacttgaagttggtgaatcaaatcctg |
161 |
Q |
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| T |
15502543 |
caagctatcatgtcattccatcaatgtggaggaaatgtaggtgatgttgttaacatcccattgccaaaatgggtacttgacattggagaatcagatcctg |
15502642 |
T |
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| Q |
162 |
atatcttttaca |
173 |
Q |
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| T |
15502643 |
atatcttctaca |
15502654 |
T |
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