View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1417_high_2 (Length: 237)

Name: NF1417_high_2
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1417_high_2
NF1417_high_2
[»] chr7 (1 HSPs)
chr7 (1-211)||(26707051-26707261)
[»] chr5 (13 HSPs)
chr5 (31-224)||(30060063-30060256)
chr5 (1-208)||(29853021-29853228)
chr5 (28-210)||(30749351-30749533)
chr5 (38-224)||(30483098-30483284)
chr5 (38-211)||(30435529-30435702)
chr5 (28-224)||(30242585-30242781)
chr5 (38-224)||(30338748-30338934)
chr5 (31-211)||(30399784-30399964)
chr5 (28-211)||(30677381-30677564)
chr5 (38-217)||(30713645-30713824)
chr5 (28-217)||(29871887-29872076)
chr5 (19-141)||(30206302-30206424)
chr5 (29-132)||(17418374-17418477)
[»] chr4 (1 HSPs)
chr4 (28-224)||(20296804-20297000)
[»] chr3 (1 HSPs)
chr3 (28-208)||(25294082-25294262)
[»] chr1 (2 HSPs)
chr1 (35-211)||(7581939-7582115)
chr1 (152-211)||(7099131-7099190)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26707261 - 26707051
Alignment:
Q  1 tcgggttttatgcatatcccaggtattatcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactca 100  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  26707261 tcgggttttatgcacatcccaggtattatcactagggagcttaattcatttaaggtatttggaacttcgttatcttgatataaaaaagtttcctaactca 26707162  T
Q  101 atttacaacttacaaaaactggaaatcttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcata 200  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||| || ||||||||| |||| |||||||||||||| ||||    
T  26707161 atttacaacttaaaaaaactggaaatcttgaaaataaaagattgtgataatctgagttgtcttcctaaacacttgacttgtttacaaaatcttagacata 26707062  T
Q  201 tagtcattgaa 211  Q
    |||||||||||    
T  26707061 tagtcattgaa 26707051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 30060256 - 30060063
Alignment:
Q  31 actaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttg 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30060256 actaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctgactcaatttacaacttacaaaaactggaaatcttg 30060157  T
Q  131 aaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgttggtctt 224  Q
    ||||||||||| ||| |||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||| ||||||    
T  30060156 aaaataaaagactgtcgtaaactgagttgtctcccaaaacgcttggcttgcttacaaaatcttagacatatagtcattgaagtatgtcggtctt 30060063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 29853228 - 29853021
Alignment:
Q  1 tcgggttttatgcatatcccaggtattatcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactca 100  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||    
T  29853228 tcgggttttatgcatatcccatgtattatcactagaaagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaatgttgccggactca 29853129  T
Q  101 atttacaacttacaaaaactggaaatcttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcata 200  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||| | ||||| |||||||| ||||||||||||||||||||||||||||| ||||    
T  29853128 atttacaacttacaaaaactggaaatattgaaaataaaagactgcggtgaactgagttgtctcccgaaacacttggcttgcttacaaaatcttagacata 29853029  T
Q  201 tagtcatt 208  Q
    ||||||||    
T  29853028 tagtcatt 29853021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 30749533 - 30749351
Alignment:
Q  28 atcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 127  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30749533 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 30749434  T
Q  128 ttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattga 210  Q
    ||||||||||||   ||| |||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  30749433 ttgaaaataaaacgctgtcgtaaactgagttgtctcccaaaacgcttggcttgcttacaaaatcttagacatatagtcattga 30749351  T

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Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 30483284 - 30483098
Alignment:
Q  38 agtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 137  Q
    ||||||||||||||||||||||||||||||  || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30483284 agtttaattcatttaaggtatttggaacttatttatcttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 30483185  T
Q  138 aagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgttggtctt 224  Q
    |||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30483184 aagactgtcgtaatctgagttgtctcccaaaacgcttggcttgcttacaaaatcttaggcatatagtcattgaagaatgtcggtctt 30483098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 30435702 - 30435529
Alignment:
Q  38 agtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30435702 agtttaattcatttaaggtatttggaactttgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 30435603  T
Q  138 aagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaa 211  Q
    || | ||| || | ||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  30435602 aatattgtcgtgaactgagttgtctcccaaaacgcttggtttgcttacaaaatcttagacatatagtcattgaa 30435529  T

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Target: chr5; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 30242585 - 30242781
Alignment:
Q  28 atcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 127  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||| || |||| |||||||||    
T  30242585 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatc 30242684  T
Q  128 ttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgttggtctt 224  Q
    |||||||||||| | ||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||    
T  30242685 ttgaaaataaaacattgtcgtaaactgagttgtctcccaaaacacttggcttgcttacaaaatcttagacatatagtcattaaagaatgtcggtctt 30242781  T

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Target: chr5; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 30338748 - 30338934
Alignment:
Q  38 agtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 137  Q
    ||||||||||||||||||||||||||||||  || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30338748 agtttaattcatttaaggtatttggaacttacttatcttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 30338847  T
Q  138 aagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgttggtctt 224  Q
    ||   |||| ||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30338848 aacgttgtgataaactgagttgtcttccaaaacgcttggcttgcttacaaaatcttaggcatatagtcattgaagaatgtcggtctt 30338934  T

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Target: chr5; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 30399964 - 30399784
Alignment:
Q  31 actaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttg 130  Q
    ||||||||||||||||||||||||||||||||| |||| || |||||| ||| || |||||||| |||||||||||||||||||||||||||||| ||||    
T  30399964 actaggtagtttaattcatttaaggtatttggagcttctttatcttgacatacaagagttgcctgactcaatttacaacttacaaaaactggaaaccttg 30399865  T
Q  131 aaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaa 211  Q
    ||||||||| | |||||| | ||||  ||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||    
T  30399864 aaaataaaacattgtggtgaactgatttgtctcccaaaacgcttggctttcttacaaaatcttagacatatagttattgaa 30399784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 30677381 - 30677564
Alignment:
Q  28 atcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 127  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||| || |||| |||||||||    
T  30677381 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaatatgttgcctgactcaatttacaacctaaaaaagctggaaatc 30677480  T
Q  128 ttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaa 211  Q
    |||||||||||| | |||| ||| || || || || ||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  30677481 ttgaaaataaaacactgtgataaacttagctggcttccaaaacgcttggcttgtttacaaaatcttagacatatagtcattgaa 30677564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 30713645 - 30713824
Alignment:
Q  38 agtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataa 137  Q
    ||||||||||||||||||||||||||| ||| ||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30713645 agtttaattcatttaaggtatttggaaattcattctcttggcataaaaaagttgcctgactcaatttacaacttacaaaaactggaaatcttgaaaataa 30713744  T
Q  138 aagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgt 217  Q
    || | |||  ||| || || || || || |||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  30713745 aacactgtaataaacttagttgccttccgaaacgcttggcttgtttacaaaatcttagacatatagtcattgaagaatgt 30713824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 29872076 - 29871887
Alignment:
Q  28 atcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 127  Q
    |||||| || ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||  || |||| |||||||||    
T  29872076 atcactggggagtttaattcatttaaggtatttgggacttcgttttcttgacataaaaaagttgcctgactcaatttacaatctaaaaaagctggaaatc 29871977  T
Q  128 ttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgt 217  Q
    |||||||||||| | |||| ||| || || || || || |||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  29871976 ttgaaaataaaatactgtgataaacttagctggcttccgaaacgcttggcttgtttacaaaatcttagacatatagtcattgaagaatgt 29871887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 30206424 - 30206302
Alignment:
Q  19 ccaggtattatcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaa 118  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||    
T  30206424 ccaggtaccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgaaataaaaatgttgccggactcaatttacaacttacaaaaa 30206325  T
Q  119 ctggaaatcttgaaaataaaaga 141  Q
    |||||||||||||||||||||||    
T  30206324 ctggaaatcttgaaaataaaaga 30206302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 17418374 - 17418477
Alignment:
Q  29 tcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatct 128  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||  | | ||||| |  || ||  ||| ||||| ||||||||||||||| |||||||    
T  17418374 tcactagagagtttaattcatttatggtatttagaacttcgttctgcttacataaacattttaccggactgaatttgcaacttacaaaaactagaaatct 17418473  T
Q  129 tgaa 132  Q
    ||||    
T  17418474 tgaa 17418477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 20296804 - 20297000
Alignment:
Q  28 atcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 127  Q
    ||||||||  |||||||||||||||||||||||||| ||||||  |||||  |||||| |||||||| |||||||||||||||| |||||| |||||| |    
T  20296804 atcactagagagtttaattcatttaaggtatttggagcttcgtaatcttgtcataaaagagttgcctgactcaatttacaacttgcaaaaattggaaacc 20296903  T
Q  128 ttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaaaaatgttggtctt 224  Q
    |||||||||| |   |||| ||||||||| ||||| || ||||||||||| ||| ||||||||||||| ||||||||||||||| | ||||||||||    
T  20296904 ttgaaaataatacgctgtgataatctgagttgtcttccgaaacacttggcctgcctacaaaatcttagacatatagtcattgaagattgttggtctt 20297000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 25294082 - 25294262
Alignment:
Q  28 atcactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 127  Q
    |||| |||| || |||||||||||||||||||||| ||||  ||||||||| ||||||| |||| || ||||||||||||||||| ||| ||||||||||    
T  25294082 atcaataggaagcttaattcatttaaggtatttggcactttattctcttgacataaaaatgttgtctgactcaatttacaacttaaaaatactggaaatc 25294181  T
Q  128 ttgaaaataaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcatt 208  Q
    || ||||||||| | | || ||| |||||  |||| |||||||| ||||||||||||||||||||||| ||| || |||||    
T  25294182 ttaaaaataaaatattatgataaactgagtggtcttccaaaacatttggcttgcttacaaaatcttagacatctaatcatt 25294262  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 7581939 - 7582115
Alignment:
Q  35 ggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaa 134  Q
    ||||||||||||||||| |||||||| || ||||    | |||| ||| |||  || ||  |||||||||| | |||||||||  || |||||||||||     
T  7581939 ggtagtttaattcatttgaggtatttagagcttcacaattttgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaat 7582038  T
Q  135 taaaagagtgtggtaatctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaa 211  Q
    | ||||| | |   || ||||| ||||| ||  |||||||| ||||||||||||||||||| ||| |||||||||||    
T  7582039 tgaaagatttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcattgaa 7582115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 7099190 - 7099131
Alignment:
Q  152 ctgagatgtctcccaaaacacttggcttgcttacaaaatcttaggcatatagtcattgaa 211  Q
    ||||| ||||| ||| |||||||| ||||||||||||||||||| ||| || ||||||||    
T  7099190 ctgagttgtcttccagaacacttgtcttgcttacaaaatcttagacatttaatcattgaa 7099131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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