View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1417_low_11 (Length: 207)

Name: NF1417_low_11
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1417_low_11
NF1417_low_11
[»] chr3 (1 HSPs)
chr3 (115-199)||(49288086-49288170)
[»] chr2 (1 HSPs)
chr2 (115-178)||(4385786-4385849)
[»] chr7 (1 HSPs)
chr7 (115-165)||(35770846-35770896)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 49288086 - 49288170
Alignment:
Q  115 tggaaaacgaaaatggatatgagagaacaaatattgacgagttttttcaatcaggaaacaacaacacaatagcaacattcatctc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  49288086 tggaaaacgaaaatggatatgagagaacaaatattgacgagttttttcaatcaggaaacaacaacacaccagcaacattcatctc 49288170  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 4385849 - 4385786
Alignment:
Q  115 tggaaaacgaaaatggatatgagagaacaaatattgacgagttttttcaatcaggaaacaacaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4385849 tggaaaacgaaaatggatatgagagaacaaatattgacgagttttttcaatcaggaaacaacaa 4385786  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 35770896 - 35770846
Alignment:
Q  115 tggaaaacgaaaatggatatgagagaacaaatattgacgagttttttcaat 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35770896 tggaaaacgaaaatggatatgagagaacaaatattgacgagttttttcaat 35770846  T

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