View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1417_low_2 (Length: 405)
Name: NF1417_low_2
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1417_low_2 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 209 - 364
Target Start/End: Original strand, 32218671 - 32218826
Alignment:
| Q |
209 |
gaatgaatctaaaatattgaattttagatataacattaatatttttgttcttctttttacttgttagatgattagatatgacacatagatgatgatagtt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
32218671 |
gaatgaatctaaaatattgaattttagatataacattaatacttttgttcttctttttacttgttagatgattagatatgatacagagatgatgatagtt |
32218770 |
T |
|
| Q |
309 |
agatattctttcttctttcgtccttttacttgttagataattagatatggcataaa |
364 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32218771 |
agatattctttcttctttcttccttttacttgttagataattagacatggcataaa |
32218826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 32226478 - 32226586
Alignment:
| Q |
13 |
aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaattcatcccaaatcatgtattctctttgtatattatatagtgtatcc |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
32226478 |
aatataatattcttattggtaaatttgttgaagtgtataattgaaagtgaaaaattcatcccaaatcatgtattttctttgtatattatacagtgtatcc |
32226577 |
T |
|
| Q |
113 |
tccgatcac |
121 |
Q |
| |
|
||| ||||| |
|
|
| T |
32226578 |
tccaatcac |
32226586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 32217176 - 32217230
Alignment:
| Q |
13 |
aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaat |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32217176 |
aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaat |
32217230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 32218524 - 32218583
Alignment:
| Q |
62 |
aaaaattcatcccaaatcatgtattctctttgtatattatatagtgtatcctccgatcac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
32218524 |
aaaaattcatcccaaatcatgtattctctttgtatattatacaatgtatccaccgatcac |
32218583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 250 - 364
Target Start/End: Original strand, 24240140 - 24240253
Alignment:
| Q |
250 |
tttttgttcttctttttacttgttagatgattagatatgacacatagatgatgatagttagatattctttcttctttcgtccttttacttgttagataat |
349 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24240140 |
tttttgtt-ttctttttacttgttagatgattagatatgacacagagatgatgatagttagatattctttcttctttcttccttttacttgttagataat |
24240238 |
T |
|
| Q |
350 |
tagatatggcataaa |
364 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24240239 |
tagatatggcataaa |
24240253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 24240214 - 24240272
Alignment:
| Q |
256 |
ttcttctttttacttgttagatgattagatatgacacatagatgatgatagttagatat |
314 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| || | |||||||||| |||||||| |
|
|
| T |
24240214 |
ttcttccttttacttgttagataattagatatggcataaagatgatgatgattagatat |
24240272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 9635372 - 9635321
Alignment:
| Q |
47 |
gtataattgaaagtgaaaaattcatcccaaatcatgtattctctttgtatat |
98 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
9635372 |
gtataattggaagtgaaaaattcaacccaaaacatgtattctctttatatat |
9635321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 18199907 - 18199849
Alignment:
| Q |
264 |
tttacttgttagatgattagatatgacacatagatgatgatagttagatattctttctt |
322 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| || |||||| |||||||||| ||||| |
|
|
| T |
18199907 |
tttacttgttagataattagatatgacatatatatcatgataattagatattccttctt |
18199849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 9624759 - 9624708
Alignment:
| Q |
47 |
gtataattgaaagtgaaaaattcatcccaaatcatgtattctctttgtatat |
98 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
9624759 |
gtataattggaagtgaaaaattcaacccaaaacatgtattttctttatatat |
9624708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 287890 - 287948
Alignment:
| Q |
264 |
tttacttgttagatgattagatatgacacatagatgatgatagttagatattctttctt |
322 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| || |||||| |||||||||| ||||| |
|
|
| T |
287890 |
tttacttgttagataattagatatgacatatatatcatgataattagatattccttctt |
287948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 8082838 - 8082931
Alignment:
| Q |
13 |
aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaattcatccc-aaatc-atgtattctctttgtatattatata |
104 |
Q |
| |
|
||||||| ||| |||| |||| |||||| | | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||| ||||| |
|
|
| T |
8082838 |
aatataacatttttatatgtaaatttgtttatgggtataattgaaagtgaaaaagtcatcccaaaatcaatgtattctctttatatataatata |
8082931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 32675896 - 32675844
Alignment:
| Q |
13 |
aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaa |
65 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||| |||||||||||| |||||| |
|
|
| T |
32675896 |
aatataatattcttataggcaagtttgtttaagggtataattgaaaatgaaaa |
32675844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 17264234 - 17264182
Alignment:
| Q |
21 |
attcttattggtaagtttgttgaagtgtataattgaaagtgaaaaattcatcc |
73 |
Q |
| |
|
||||||||||| || |||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
17264234 |
attcttattggcaaatttgtttaaggctataattgaaagtgaaaaagtcatcc |
17264182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University