View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1417_low_4 (Length: 352)
Name: NF1417_low_4
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1417_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 41565856 - 41565519
Alignment:
| Q |
1 |
ttgttatcatcatcattagaaggatcatcatagttattacgaccatcacattccttacacgattgattaatatcaaaagcattcttcaaaacattttcag |
100 |
Q |
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| T |
41565856 |
ttgttatcatcatcattagaaggatcatcatagttattacgaccatcacattccttacacgattgattaatatcaaaagcattcttcaaaacattttcag |
41565757 |
T |
|
| Q |
101 |
cta--acttcctttctgcaaactcatcctttttcttactataagctatagcggcttctatatcatcatcaaaattaccaagccacttccttgttttttca |
198 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41565756 |
ctataacttcctttctgcaaactcatcctttttcttactataagctatagcagcttctatatcatcatcaaaattaccaagccacttccttgttttttca |
41565657 |
T |
|
| Q |
199 |
aatggatcacaattttcagcagaataccttccccaatgtctaaagccatacacctttgaacttactagttggagtcttgtttggattgatgtccttcaca |
298 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41565656 |
aatggatcacaattttcagcagaataccttccccattgtct-aagccatacacctttgaacttactagttggagtcttgtttggattgatgtccttcaca |
41565558 |
T |
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| Q |
299 |
tacagctttctggccacttcgtcctttgaatttactatt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
41565557 |
tacagctttctggccacttcgtcctttgaatttactatt |
41565519 |
T |
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