View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1417_low_5 (Length: 316)
Name: NF1417_low_5
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1417_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 91 - 299
Target Start/End: Complemental strand, 4003470 - 4003262
Alignment:
| Q |
91 |
aaaataatcaactaaatttaagatcaatctcatcatccacaaacaaaaactctaattaaaggcaaaacaaaactttgtatttactgacccaaaaatattt |
190 |
Q |
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| T |
4003470 |
aaaataatcaacttattttaagatcaatctcatcatccacaaacaaaaactcttattaaaggcaaaacaaaactttgtatttactgacccaaaaatattt |
4003371 |
T |
|
| Q |
191 |
tacatcttagagattcaaactcaaaacttagaaaggaatacacttccaaatctcaagcttcaccacctagcctaggtcttaggttaacattattcatatg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4003370 |
tacatcttagagattcaaactcaaaacttagaaaggaatacacttccaaatctcaagcttcaccacctagcctaggtcttaggttaacattattcatatg |
4003271 |
T |
|
| Q |
291 |
taaatatgg |
299 |
Q |
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||||||||| |
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| T |
4003270 |
taaatatgg |
4003262 |
T |
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