View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1417_low_6 (Length: 297)

Name: NF1417_low_6
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1417_low_6
NF1417_low_6
[»] chr1 (11 HSPs)
chr1 (13-279)||(11010507-11010773)
chr1 (13-273)||(10978931-10979201)
chr1 (21-273)||(10914204-10914466)
chr1 (8-273)||(10903031-10903306)
chr1 (21-273)||(10932584-10932847)
chr1 (54-273)||(11028842-11029070)
chr1 (130-273)||(11005255-11005398)
chr1 (130-273)||(10993939-10994082)
chr1 (130-273)||(10901387-10901530)
chr1 (148-273)||(11032933-11033058)
chr1 (148-273)||(11007480-11007605)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 11010507 - 11010773
Alignment:
Q  13 aatatgatatgtaattcaaacgagaaccaaaagagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010507 aatatgatatgtaattcaaacgagaaccaaaagagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa 11010606  T
Q  113 acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010607 acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattg 11010706  T
Q  213 aaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagctt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010707 aaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagctt 11010773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 10978931 - 10979201
Alignment:
Q  13 aatatgatatgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgta 111  Q
    ||||||||||||||||||| | |||||||||| |||||||| |||||||||||||| ||||||||||||||||||  ||| |||||||||| ||| | ||    
T  10978931 aatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattata 10979030  T
Q  112 a---------acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaact 202  Q
    |         |||||| ||| ||||| |||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||    
T  10979031 atcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 10979130  T
Q  203 ttatccattgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    ||||||||||||||||| || || |||||||||||||||||||| || |||||||||||||||||||||||    
T  10979131 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgc 10979201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 10914204 - 10914466
Alignment:
Q  21 atgtaattcaaacgagaacca-aaagagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa------- 112  Q
    ||||||||||| | ||||||| ||||||||||| |||||||||||| |  |||||||||||||||||  ||||||||||| |||||||  | |           
T  10914204 atgtaattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctc 10914303  T
Q  113 --acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccat 210  Q
      ||||| ||| |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  10914304 caacatctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccat 10914403  T
Q  211 tgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    |||||||||||| || |||||||| ||||||||||| || || ||||||||||||||||||||    
T  10914404 tgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgc 10914466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 10903031 - 10903306
Alignment:
Q  8 cgaagaatatgatatgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgcta 106  Q
    |||| ||||||||||||||||||  | |||||||||| ||||| || |||||||||||| | |||||| ||||||||||| |||||||||||||||||||    
T  10903031 cgaacaatatgatatgtaattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgcta 10903130  T
Q  107 ctgtaaacatcc---------gctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctcca 197  Q
     | | | ||||          ||| |||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||    
T  10903131 ttattatcatctccaacgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctcca 10903230  T
Q  198 aaactttatccattgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||  ||||||||||||||||    
T  10903231 aaactttatccattgaaggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgc 10903306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 10932584 - 10932847
Alignment:
Q  21 atgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactg----ta---- 111  Q
    ||||| ||||| | |||||||||| ||||| || |||||||||||| | |||||||||||||||||| |||||||||||||||||||||     ||        
T  10932584 atgtacttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctc 10932683  T
Q  112 -aacatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctcc-aaaactttatcca 209  Q
     ||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||    
T  10932684 caacatcctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttcca 10932783  T
Q  210 ttgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    ||||||||||||| || || ||||| ||||||||||| || ||||| |||||||||||||||||    
T  10932784 ttgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgc 10932847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 11029070 - 11028842
Alignment:
Q  54 ttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa---------acatccgctattggtgaatcttgtggacaaaa 144  Q
    |||||| ||||| | | |||||||||||||||| ||||||||||||||||||||| | |         |||||| ||| | ||| |||||| ||||||||    
T  11029070 ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa 11028971  T
Q  145 gtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggttttgtctgtatacac 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||    
T  11028970 gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac 11028871  T
Q  245 cataacgccacaatcatcattttctttgc 273  Q
    || || ||| || ||||||||||||||||    
T  11028870 cacaaagccgcagtcatcattttctttgc 11028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 130 - 273
Target Start/End: Complemental strand, 11005398 - 11005255
Alignment:
Q  130 atcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggt 229  Q
    |||||||||| ||| ||||||||||||||| || ||||| || ||||||||||||||||||||||| |  |||||||||||||||||||||||| | |||    
T  11005398 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcacctggt 11005299  T
Q  230 tttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  11005298 tttgtctgtatacaccataaagccacaatcatcattttctttgc 11005255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 130 - 273
Target Start/End: Complemental strand, 10994082 - 10993939
Alignment:
Q  130 atcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggt 229  Q
    |||||||||| ||| ||||||||||||||| || ||||| || ||||||||||||||||||||||| |  ||||||||||||||||||||||||  ||||    
T  10994082 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 10993983  T
Q  230 tttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  10993982 tttgtctgaatacaccataatgccacaatcatcattttctttgc 10993939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 10901387 - 10901530
Alignment:
Q  130 atcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggt 229  Q
    |||||||||| ||| ||||||||| ||||| || ||||| || |||||||||| | |||||||||| |  ||||||||||||||||||||||||  ||||    
T  10901387 atcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcatctcaatcactttatccattgaaggacgatcactaggt 10901486  T
Q  230 tttgtctgtatacaccataacgccacaatcatcattttctttgc 273  Q
    ||||||||  |||||||||| |||||||||||| ||||||||||    
T  10901487 tttgtctgagtacaccataatgccacaatcatcgttttctttgc 10901530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 273
Target Start/End: Original strand, 11032933 - 11033058
Alignment:
Q  148 aggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggttttgtctgtatacaccat 247  Q
    |||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||  |||||| | ||| ||||||||     
T  11032933 aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac 11033032  T
Q  248 aacgccacaatcatcattttctttgc 273  Q
    || ||||| |||||||||||||||||    
T  11033033 aaagccactatcatcattttctttgc 11033058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 148 - 273
Target Start/End: Original strand, 11007480 - 11007605
Alignment:
Q  148 aggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggttttgtctgtatacaccat 247  Q
    ||||| |||||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||  |||||| |  || ||||||||     
T  11007480 aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac 11007579  T
Q  248 aacgccacaatcatcattttctttgc 273  Q
    || ||||| |||||||||||||||||    
T  11007580 aaagccactatcatcattttctttgc 11007605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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