View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1417_low_7 (Length: 263)

Name: NF1417_low_7
Description: NF1417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1417_low_7
NF1417_low_7
[»] chr4 (19 HSPs)
chr4 (47-248)||(39840542-39840743)
chr4 (1-49)||(47099019-47099067)
chr4 (2-46)||(51741357-51741401)
chr4 (1-46)||(624338-624383)
chr4 (1-46)||(5932183-5932228)
chr4 (1-46)||(22819649-22819694)
chr4 (7-48)||(32546389-32546430)
chr4 (9-46)||(40590612-40590649)
chr4 (1-47)||(51887662-51887708)
chr4 (3-60)||(12112616-12112673)
chr4 (1-46)||(13086022-13086067)
chr4 (1-46)||(13263423-13263468)
chr4 (1-46)||(23822271-23822316)
chr4 (1-46)||(30079846-30079891)
chr4 (1-46)||(39345006-39345051)
chr4 (1-46)||(46406000-46406045)
chr4 (8-49)||(49896699-49896740)
chr4 (1-45)||(41262371-41262415)
chr4 (9-45)||(52846249-52846285)
[»] chr7 (18 HSPs)
chr7 (1-47)||(43573569-43573615)
chr7 (1-46)||(16980297-16980342)
chr7 (1-45)||(29002609-29002653)
chr7 (6-43)||(11564896-11564933)
chr7 (1-46)||(13162919-13162964)
chr7 (1-46)||(13729726-13729771)
chr7 (1-46)||(21822625-21822670)
chr7 (1-45)||(46812931-46812975)
chr7 (7-46)||(41227067-41227106)
chr7 (7-49)||(22638916-22638958)
chr7 (8-46)||(33180743-33180781)
chr7 (9-46)||(3937144-3937181)
chr7 (1-46)||(28036744-28036789)
chr7 (9-46)||(33224835-33224872)
chr7 (1-45)||(19786105-19786149)
chr7 (6-46)||(21023148-21023188)
chr7 (1-49)||(39331982-39332030)
chr7 (9-49)||(42926149-42926189)
[»] chr6 (7 HSPs)
chr6 (1-46)||(754464-754509)
chr6 (1-48)||(35213587-35213634)
chr6 (1-46)||(30036820-30036865)
chr6 (7-46)||(18141333-18141372)
chr6 (1-43)||(30152556-30152598)
chr6 (9-46)||(5028288-5028325)
chr6 (1-41)||(13143408-13143448)
[»] chr5 (16 HSPs)
chr5 (1-49)||(21064252-21064300)
chr5 (7-46)||(22402658-22402697)
chr5 (1-47)||(35099031-35099077)
chr5 (1-45)||(41173253-41173297)
chr5 (7-43)||(43196657-43196693)
chr5 (1-47)||(4430962-4431008)
chr5 (8-46)||(15953066-15953104)
chr5 (1-47)||(43441737-43441783)
chr5 (1-46)||(4771497-4771542)
chr5 (1-46)||(8675459-8675504)
chr5 (7-48)||(9933498-9933539)
chr5 (1-46)||(9977119-9977164)
chr5 (1-46)||(15267784-15267829)
chr5 (1-46)||(23126369-23126414)
chr5 (1-46)||(42446317-42446362)
chr5 (8-48)||(6241619-6241659)
[»] chr3 (16 HSPs)
chr3 (8-48)||(30567993-30568033)
chr3 (1-47)||(24482989-24483035)
chr3 (9-46)||(3281738-3281775)
chr3 (1-46)||(30909029-30909074)
chr3 (1-46)||(39671124-39671169)
chr3 (1-46)||(50206996-50207041)
chr3 (7-48)||(53718047-53718088)
chr3 (1-47)||(25188491-25188537)
chr3 (1-47)||(49363277-49363323)
chr3 (1-46)||(8821630-8821675)
chr3 (1-46)||(10206999-10207044)
chr3 (9-46)||(21005198-21005235)
chr3 (1-46)||(44677510-44677555)
chr3 (10-46)||(26672412-26672448)
chr3 (1-49)||(46982929-46982976)
chr3 (9-45)||(48281888-48281924)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-52)||(8208-8259)
[»] chr8 (17 HSPs)
chr8 (1-48)||(16872182-16872229)
chr8 (1-47)||(34490183-34490229)
chr8 (1-46)||(7592849-7592894)
chr8 (8-49)||(21467381-21467422)
chr8 (1-46)||(30136041-30136086)
chr8 (1-48)||(16613632-16613679)
chr8 (9-48)||(34873846-34873885)
chr8 (1-47)||(1633916-1633962)
chr8 (13-46)||(5697677-5697710)
chr8 (1-46)||(16966785-16966830)
chr8 (1-46)||(33589256-33589301)
chr8 (7-48)||(34718113-34718154)
chr8 (7-47)||(14707376-14707416)
chr8 (8-48)||(15795073-15795113)
chr8 (1-45)||(16327178-16327222)
chr8 (7-47)||(29991411-29991451)
chr8 (1-45)||(34591263-34591307)
[»] chr1 (24 HSPs)
chr1 (1-48)||(35136842-35136889)
chr1 (1-48)||(36577438-36577485)
chr1 (7-46)||(37588707-37588746)
chr1 (7-46)||(47721409-47721448)
chr1 (7-46)||(47728401-47728440)
chr1 (1-46)||(1790508-1790553)
chr1 (1-46)||(1852977-1853022)
chr1 (1-46)||(33024597-33024642)
chr1 (1-46)||(50328167-50328212)
chr1 (1-49)||(3603108-3603156)
chr1 (9-49)||(18336155-18336195)
chr1 (1-45)||(33054114-33054158)
chr1 (7-46)||(45008196-45008235)
chr1 (7-46)||(51286399-51286438)
chr1 (1-46)||(756856-756901)
chr1 (1-46)||(7128118-7128163)
chr1 (1-46)||(8411744-8411789)
chr1 (1-46)||(26585905-26585950)
chr1 (1-46)||(37178703-37178748)
chr1 (1-46)||(46082147-46082192)
chr1 (1-49)||(9008222-9008270)
chr1 (8-52)||(16836137-16836181)
chr1 (7-47)||(44789175-44789215)
chr1 (1-45)||(48325968-48326012)
[»] chr2 (17 HSPs)
chr2 (1-51)||(29684638-29684688)
chr2 (8-46)||(38257698-38257736)
chr2 (1-46)||(18176940-18176985)
chr2 (1-46)||(35589413-35589458)
chr2 (1-47)||(37257448-37257494)
chr2 (1-43)||(39213796-39213838)
chr2 (1-46)||(4952506-4952551)
chr2 (7-44)||(11167551-11167588)
chr2 (1-46)||(18510675-18510720)
chr2 (1-46)||(29051679-29051724)
chr2 (1-46)||(36802896-36802941)
chr2 (1-46)||(39449267-39449312)
chr2 (9-45)||(1836014-1836050)
chr2 (1-49)||(12889858-12889906)
chr2 (1-45)||(13347841-13347885)
chr2 (7-47)||(28245727-28245767)
chr2 (8-52)||(30977883-30977927)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-46)||(19636-19681)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 39840542 - 39840743
Alignment:
Q  47 attgaattacacatcaaaaggaatctaaaaaaggttaaacatgaggaagtgcggcaacgtcatcttgactccttttcaggtagaccccaggtgggaattt 146  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39840542 attgaattacgcatcaaaaggaatctaaaaaaggttaaacatgaggaagtgcggcaacgtcatcttgactccttttcaggtagaccccaggtgggaattt 39840641  T
Q  147 gcttcacaacttgcaataaacaaaaatccaaacagcaaagaagaacagatcaaattggtgagagatctctctataatggtttaatccattcaaccctttt 246  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39840642 gcttgacaacttgcaataaacaaaaatccaaacagcaaagaagaacagatcaaattggtgagagatctctctgtaatggtttaatccattcaaccctttt 39840741  T
Q  247 ag 248  Q
    ||    
T  39840742 ag 39840743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47099067 - 47099019
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  47099067 ttgttgcaaaagttgtcacaaaatgaatattcaaatatcatttctcatt 47099019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 51741401 - 51741357
Alignment:
Q  2 tgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||    
T  51741401 tgttgcaaaagttgtcactaaataaatgttcaaatatcatttctc 51741357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 624338 - 624383
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  624338 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 624383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5932183 - 5932228
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  5932183 ttgttgcaaaagttgtcactaaatggatgtttaaatatcatttctc 5932228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22819694 - 22819649
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  22819694 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 22819649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 32546389 - 32546430
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  32546389 caaaaattgtcacaaaataaatgttcaaatatcatttctcat 32546430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 40590649 - 40590612
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||| |||||||||||||||||||    
T  40590649 aaagttgtcacaaaataattgtttaaatatcatttctc 40590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51887708 - 51887662
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    |||| |||||||||||||||||||  ||||| |||||||||||||||    
T  51887708 ttgtagcaaaagttgtcacaaaatggatgttcaaatatcatttctca 51887662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 12112673 - 12112616
Alignment:
Q  3 gttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcattgaattacacat 60  Q
    ||||||||||||||||| ||||  ||||| ||||||||||| ||||| ||||| ||||    
T  12112673 gttgcaaaagttgtcactaaatggatgttcaaatatcatttatcattcaattatacat 12112616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13086067 - 13086022
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||| |||||||||||||||||| |||| | ||||||||||||||    
T  13086067 ttgttacaaaagttgtcacaaaatgaatgatcaaatatcatttctc 13086022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13263423 - 13263468
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||| |||||||||||||||||||| ||||| |||||||| |||||    
T  13263423 ttgtagcaaaagttgtcacaaaatagatgttcaaatatcacttctc 13263468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23822271 - 23822316
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||  |||| |||||| ||||||||||||||    
T  23822271 ttgttgcaaaagttgtcattaaatgaatgttcaaatatcatttctc 23822316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30079891 - 30079846
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  30079891 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 30079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39345006 - 39345051
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||||||    
T  39345006 ttgttgcaaaaattgtcacaaaatggatgttcaaatatcatttctc 39345051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46406000 - 46406045
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| |||| ||| || ||||||||||||||    
T  46406000 ttgttgcaaaagttgtcaccaaatgaatattcaaatatcatttctc 46406045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 49896699 - 49896740
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  49896699 aaaagttgtcaaaaaatatatgtttaactatcatttctcatt 49896740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41262371 - 41262415
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||||||||| |||||| ||||||  ||||||||||||||||||    
T  41262371 ttgttgcaaaaattgtcaaaaaatagttgtttaaatatcatttct 41262415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 52846249 - 52846285
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    |||||||||| |||||| |||||||||||||||||||    
T  52846249 aaagttgtcataaaatagatgtttaaatatcatttct 52846285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43573569 - 43573615
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  43573569 ttgttgcaaaagttgtcacaaaatagatgttcaaatatcatttctca 43573615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16980342 - 16980297
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  16980342 ttgttgcaaaagttgtcacaaaatgaatgttcaaatatcatttctc 16980297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29002653 - 29002609
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  29002653 ttgttgcaaaagttgtcactaaatagatgtttaaatatcatttct 29002609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 11564933 - 11564896
Alignment:
Q  6 gcaaaagttgtcacaaaataaatgtttaaatatcattt 43  Q
    |||||||||||||||||||||||||| |||||||||||    
T  11564933 gcaaaagttgtcacaaaataaatgttcaaatatcattt 11564896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13162964 - 13162919
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  13162964 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 13162919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13729771 - 13729726
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  13729771 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 13729726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21822625 - 21822670
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  21822625 ttgttgcaaaaattgtcacaaaatagatgttcaaatatcatttctc 21822670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46812931 - 46812975
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||    
T  46812931 ttgtagcaaaagttgtcacaaaatgaatgttcaaatatcatttct 46812975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 41227106 - 41227067
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  41227106 caaaagttgtcacaaaataattgtataaatatcatttctc 41227067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 22638916 - 22638958
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    |||||||||||| |||||| ||||| |||||||||||||||||    
T  22638916 caaaagttgtcataaaatagatgttcaaatatcatttctcatt 22638958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 33180743 - 33180781
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  33180743 aaaagttgtcacaaaatgaatgttcaaatatcatttctc 33180781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 3937144 - 3937181
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  3937144 aaagttgtcacaaaatagatgttcaaatatcatttctc 3937181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28036789 - 28036744
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||| || |||||| |||||| |||||||    
T  28036789 ttgttgcaaaagttgtcacaacatgaatgttcaaatattatttctc 28036744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 33224872 - 33224835
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  33224872 aaagttgtcacaaaatagatgttcaaatatcatttctc 33224835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19786105 - 19786149
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||    
T  19786105 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttct 19786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 21023148 - 21023188
Alignment:
Q  6 gcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||| |||| |||||| ||||||||||||||    
T  21023148 gcaaaagttgtcactaaatgaatgttcaaatatcatttctc 21023188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39332030 - 39331982
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||| ||||||||||||| ||||  ||||| |||||||||||||||||    
T  39332030 ttgttacaaaagttgtcactaaatggatgttcaaatatcatttctcatt 39331982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 42926189 - 42926149
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  42926189 aaagttgtcaccaaataaatattcaaatatcatttctcatt 42926149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 754464 - 754509
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  754464 ttgttgcaaaagttgtcacaaaatgaatgttcaaatatcatttctc 754509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35213587 - 35213634
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  35213587 ttgttacaaaagttgtcacaaaatagatgttcaaatatcatttctcat 35213634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30036820 - 30036865
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  30036820 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 30036865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 18141333 - 18141372
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  18141333 caaaagttgtcataaaatgaatgtttaaatatcatttctc 18141372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30152556 - 30152598
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcattt 43  Q
    ||||||||||||||||||| |||| |||||| |||||||||||    
T  30152556 ttgttgcaaaagttgtcactaaatgaatgttcaaatatcattt 30152598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 5028288 - 5028325
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  5028288 aaagttgtcacaaaatggatgtttaaatatcatttctc 5028325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13143408 - 13143448
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcat 41  Q
    ||||||||||| |||||||||||| |||||| |||||||||    
T  13143408 ttgttgcaaaaattgtcacaaaatgaatgttcaaatatcat 13143448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21064252 - 21064300
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  21064252 ttgttgcaaaagttgtcactaaatgaatgttcaaatatcatttctcatt 21064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 22402658 - 22402697
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  22402658 caaaagttgtcacaaaataaatgttcaaatatcatttctc 22402697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35099031 - 35099077
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  35099031 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctca 35099077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41173297 - 41173253
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  41173297 ttgttacaaaagttgtcacaaaatggatgtttaaatatcatttct 41173253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 43196657 - 43196693
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcattt 43  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43196657 caaaaattgtcacaaaataaatgtttaaatatcattt 43196693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4430962 - 4431008
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||||    
T  4430962 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctca 4431008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 15953066 - 15953104
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  15953066 aaaagttgtcacaaaatagatgttcaaatatcatttctc 15953104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43441783 - 43441737
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    |||||||||||||||| |||||||  ||||| |||||||||||||||    
T  43441783 ttgttgcaaaagttgttacaaaatggatgttcaaatatcatttctca 43441737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4771542 - 4771497
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||| |||||| ||||||||||||| ||||| ||||||||||||||    
T  4771542 ttgtagcaaaatttgtcacaaaatatatgttcaaatatcatttctc 4771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8675459 - 8675504
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||||    
T  8675459 ttgttgcaaaagttatcacaaaatggatgttcaaatatcatttctc 8675504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 9933539 - 9933498
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    |||||||||||| ||||| |||||| ||||||||||||||||    
T  9933539 caaaagttgtcataaaatgaatgttcaaatatcatttctcat 9933498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9977164 - 9977119
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  9977164 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 9977119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15267829 - 15267784
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  15267829 ttgttgcaaaagttgtcactaaatggatgttaaaatatcatttctc 15267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23126369 - 23126414
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  23126369 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 23126414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42446317 - 42446362
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  42446317 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctc 42446362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 6241659 - 6241619
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  6241659 aaaaattgtcacaaaataaatgttcaaatatcatttttcat 6241619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 30567993 - 30568033
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  30567993 aaaagttgtcacaaaataaatgttcaaatatcatttctcat 30568033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24482989 - 24483035
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||    
T  24482989 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctca 24483035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 3281738 - 3281775
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3281738 aaagttgtcacaaaataaatgttcaaatatcatttctc 3281775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30909074 - 30909029
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  30909074 ttgttgcaaaagttgtcactaaatgaatgttcaaatatcatttctc 30909029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39671124 - 39671169
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  39671124 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 39671169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50206996 - 50207041
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  50206996 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 50207041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 53718088 - 53718047
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  53718088 caaaagttgtcacaaaatggatgtttaaatatcatttctcat 53718047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25188491 - 25188537
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    |||||||||||||||||| ||||||  |||| |||||||||||||||    
T  25188491 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctca 25188537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49363277 - 49363323
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||||    
T  49363277 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctca 49363323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8821675 - 8821630
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  8821675 ttgttacaaaagttgtcactaaatagatgttcaaatatcatttctc 8821630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10206999 - 10207044
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  10206999 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 10207044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 21005198 - 21005235
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  21005198 aaagttgtcacaaaatagatgttcaaatatcatttctc 21005235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44677510 - 44677555
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  44677510 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 44677555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 26672448 - 26672412
Alignment:
Q  10 aagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  26672448 aagttgtcacaaaatgaatgttcaaatatcatttctc 26672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46982929 - 46982976
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||| ||||||| ||||| ||||| |||||||||||||||||    
T  46982929 ttgttgcaaaa-ttgtcactaaatagatgttcaaatatcatttctcatt 46982976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 48281888 - 48281924
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  48281888 aaagttgtcacaaaatatatgttcaaatatcatttct 48281924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8259 - 8208
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcattgaa 52  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||| |||||    
T  8259 ttgttgcaaaagttgtcataaaatgaatgttcaaatatcatttctctttgaa 8208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16872182 - 16872229
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  16872182 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 16872229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34490183 - 34490229
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||    
T  34490183 ttgttgcaaaagttgtcacaaaattgatatttaaatatcatttctca 34490229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7592894 - 7592849
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  7592894 ttgttgcaaaagttgtcactaaatgaatgttcaaatatcatttctc 7592849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 21467422 - 21467381
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  21467422 aaaagttgtcaaaaaataaatgtataaatatcatttctcatt 21467381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30136041 - 30136086
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||    
T  30136041 ttgttgcaaaagttgtcattaaataaatgttcaaatatcatttctc 30136086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16613679 - 16613632
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    |||| |||||| ||||||||||||| ||||| ||||||||||||||||    
T  16613679 ttgtagcaaaaattgtcacaaaatagatgttcaaatatcatttctcat 16613632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 34873885 - 34873846
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  34873885 aaagttgtcacaaaataattgttaaaatatcatttctcat 34873846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1633916 - 1633962
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||||    
T  1633916 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctca 1633962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 5697710 - 5697677
Alignment:
Q  13 ttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||| |||||||||||||||||||    
T  5697710 ttgtcacaaaataattgtttaaatatcatttctc 5697677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16966830 - 16966785
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  16966830 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 16966785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33589256 - 33589301
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  33589256 ttgttgcaaaagttgtcactaaatggatgttgaaatatcatttctc 33589301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 34718154 - 34718113
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  34718154 caaaagttgtcacaaaatggatgttcaaatatcatttctcat 34718113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 14707376 - 14707416
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    |||||||||||| ||||| |||||| |||||||||||||||    
T  14707376 caaaagttgtcaaaaaatgaatgttcaaatatcatttctca 14707416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 15795073 - 15795113
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  15795073 aaaagttgtcacaaaataaatattcaaatgtcatttctcat 15795113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16327178 - 16327222
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    |||| |||||||||||| ||||||| || ||||||||||||||||    
T  16327178 ttgtcgcaaaagttgtcgcaaaatagatatttaaatatcatttct 16327222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 29991451 - 29991411
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  29991451 caaaagttgtcacaaaatggatgttcaaatatcatttctca 29991411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34591307 - 34591263
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    |||||||||||||||| || |||| |||||| |||||||||||||    
T  34591307 ttgttgcaaaagttgtgactaaatgaatgttcaaatatcatttct 34591263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35136889 - 35136842
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  35136889 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 35136842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36577438 - 36577485
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcat 48  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  36577438 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 36577485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 37588707 - 37588746
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  37588707 caaaagttgtcacaaaataaatgttcaaatatcatttctc 37588746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 47721448 - 47721409
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  47721448 caaaagttgtcaaaaaataaatgtttaaatatcatttctc 47721409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 47728440 - 47728401
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  47728440 caaaagttgtcaaaaaataaatgtttaaatatcatttctc 47728401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1790553 - 1790508
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  1790553 ttgttgcaaaagttgtcaccaaatgaatgttcaaatatcatttctc 1790508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1852977 - 1853022
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  1852977 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 1853022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33024597 - 33024642
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  33024597 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 33024642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50328167 - 50328212
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  50328167 ttgttgcaaaagttgtcacaaagtggatgtttaaatatcatttctc 50328212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3603156 - 3603108
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||||||    
T  3603156 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcatt 3603108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 18336195 - 18336155
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  18336195 aaagttgtcacaaaatgaatgttcaaatatcatttctcatt 18336155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33054114 - 33054158
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||    
T  33054114 ttgtagcaaaagttgtcacaaaatgaatgttcaaatatcatttct 33054158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 45008196 - 45008235
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  45008196 caaaagttgtcacaaaataattgttgaaatatcatttctc 45008235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 51286399 - 51286438
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  51286399 caaaagttgtcataaaataaatgttcaaatatcatttctc 51286438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 756901 - 756856
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  756901 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7128163 - 7128118
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  7128163 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 7128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8411744 - 8411789
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  8411744 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 8411789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26585905 - 26585950
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  26585905 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 26585950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37178748 - 37178703
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  37178748 ttgttgtaaaagttatcactaaataaatgttcaaatatcatttctc 37178703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46082147 - 46082192
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  46082147 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 46082192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9008270 - 9008222
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    ||||||||||||||||||| |||| || ||| |||||| ||||||||||    
T  9008270 ttgttgcaaaagttgtcactaaatgaacgttcaaatattatttctcatt 9008222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 16836137 - 16836181
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcattgaa 52  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||    
T  16836137 aaaagttgtcacaaaatgattgtacaaatatcatttctcattgaa 16836181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 44789175 - 44789215
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  44789175 caaaagttgtcacaaaatggatgttcaaatatcatttctca 44789215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48326012 - 48325968
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||||||||||||||||||||||| ||  | |||||||||||||    
T  48326012 ttgttgcaaaagttgtcacaaaatagattatcaaatatcatttct 48325968  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29684638 - 29684688
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcattga 51  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||| ||||    
T  29684638 ttgttgcaaaaattgtcactaaataaatgttcaaatatcatttctctttga 29684688  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 38257698 - 38257736
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  38257698 aaaaattgtcacaaaataaatgtttaaatatcatttctc 38257736  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18176985 - 18176940
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  18176985 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 18176940  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35589413 - 35589458
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  35589413 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 35589458  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37257494 - 37257448
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||||    
T  37257494 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctca 37257448  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39213796 - 39213838
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcattt 43  Q
    |||||||||||||||||||||||| |||| |||||||| ||||    
T  39213796 ttgttgcaaaagttgtcacaaaatgaatgcttaaatataattt 39213838  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4952506 - 4952551
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||| || |||| ||||||||||| ||||||||||||||    
T  4952506 ttgttgcaaaaattatcactaaataaatgttcaaatatcatttctc 4952551  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11167551 - 11167588
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttc 44  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  11167551 caaaagttatcacaaaataaatgttcaaatatcatttc 11167588  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18510720 - 18510675
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  18510720 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctc 18510675  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29051679 - 29051724
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  29051679 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 29051724  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36802941 - 36802896
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    |||| |||||||||||||||||||  ||||| ||||||||||||||    
T  36802941 ttgtagcaaaagttgtcacaaaatggatgttcaaatatcatttctc 36802896  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39449312 - 39449267
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||||||||  || || ||||||||||||||    
T  39449312 ttgttgcaaaagttgtcacaaaatggatattcaaatatcatttctc 39449267  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 1836050 - 1836014
Alignment:
Q  9 aaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    |||||||||||||||| |||||| |||||||||||||    
T  1836050 aaagttgtcacaaaatgaatgttcaaatatcatttct 1836014  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12889858 - 12889906
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctcatt 49  Q
    |||| |||||||||||||||||||  ||||| | |||||||||||||||    
T  12889858 ttgtagcaaaagttgtcacaaaatggatgttcatatatcatttctcatt 12889906  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13347841 - 13347885
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttct 45  Q
    ||||||||||| ||||||||||||  ||||| |||||||||||||    
T  13347841 ttgttgcaaaaattgtcacaaaatggatgttcaaatatcatttct 13347885  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 28245767 - 28245727
Alignment:
Q  7 caaaagttgtcacaaaataaatgtttaaatatcatttctca 47  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  28245767 caaaagttgtcgcaaaatagatgttcaaatatcatttctca 28245727  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30977927 - 30977883
Alignment:
Q  8 aaaagttgtcacaaaataaatgtttaaatatcatttctcattgaa 52  Q
    |||||||||||||||||  ||||| |||||||||||||| |||||    
T  30977927 aaaagttgtcacaaaatggatgttcaaatatcatttctctttgaa 30977883  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19681 - 19636
Alignment:
Q  1 ttgttgcaaaagttgtcacaaaataaatgtttaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  19681 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctc 19636  T

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