View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14180_high_1 (Length: 449)
Name: NF14180_high_1
Description: NF14180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14180_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 42119166 - 42118734
Alignment:
| Q |
1 |
tctgtagaagaaatattggcacactttaggtgttatttaagatagaaaggtgtttcttaagctagaaaggaaagtctactgcacaattataaagaccaat |
100 |
Q |
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| T |
42119166 |
tctgtagaagaaatattggcacactttaggtgttatttaagatagaaaggtgtttcttaagctagaaaggaaagtctactgcacaattataaagaccaat |
42119067 |
T |
|
| Q |
101 |
agtgcttgaggagtgccgacaacacactctctaacaccctatttacaaaacacactcttcaattgcttgaaattcaaatacattccactaattcatagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42119066 |
agtgcttgaggagtgccgacaacacactctctaacaccctatttacaaaacacactcttcaattgcttgaaattcaaatacattccactaattcatagtg |
42118967 |
T |
|
| Q |
201 |
ctttatgcctatggaattatataataaaaggcctacaagtctgtaagataagggccttcacaactaagcatgttgtctgtgttaaatgattggtcataca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118966 |
ctttatgcctatggaattatataataaaaggcctacaagtctgtaagataagggccttcacaactaagcatgttgtctgtgttaaatgattggtcataca |
42118867 |
T |
|
| Q |
301 |
aaaaagataagatcaagagttaaggtaatttggagaaagtaagaatagcatctattaataaaatcttgtcagaagactcatagaaatttccaagttaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118866 |
aaaaagataagatcaagagttaaggtaatttgtagaaagtaagaatagcatctattaataaaatcttgtcagaagactcatagaaatttccaagttaaaa |
42118767 |
T |
|
| Q |
401 |
taacttttcagatggaggatagccctttaattg |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42118766 |
taacttttcagatggaggatagccctttaattg |
42118734 |
T |
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