View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14180_low_2 (Length: 376)

Name: NF14180_low_2
Description: NF14180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14180_low_2
NF14180_low_2
[»] chr4 (3 HSPs)
chr4 (13-358)||(27762231-27762576)
chr4 (225-274)||(14705233-14705282)
chr4 (225-274)||(16382675-16382724)
[»] scaffold0035 (1 HSPs)
scaffold0035 (210-274)||(56406-56470)
[»] chr8 (1 HSPs)
chr8 (225-270)||(24438334-24438379)
[»] chr6 (2 HSPs)
chr6 (225-270)||(22942907-22942952)
chr6 (225-270)||(23865351-23865396)
[»] chr3 (3 HSPs)
chr3 (225-270)||(5893733-5893778)
chr3 (225-270)||(18502361-18502406)
chr3 (210-274)||(3287169-3287233)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 27762231 - 27762576
Alignment:
Q  13 aatatgaaacttgttgctaagatattcttggcattcttgtagatccaatgcaacgaatttnnnnnnntggtttcaatgacacacagtaatcctaagacca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  27762231 aataggaaacttgttgctaagatattcttggcattcttgtagatccaatgcaacgaatttaaaaaaatggtttcaatgacacacagtaatcctaagacca 27762330  T
Q  113 aatgactccctaaagtcaaatttatagcaacnnnnnnntaataggactcgttttatgtcacgattttacttaacttaattgattaatgaatgacttagca 212  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27762331 aatgactccctaaagtcaaatttatagcaacaaaaaaataataggactcgttttatgtcacaattttacttaacttaattgattaatgaatgacttagca 27762430  T
Q  213 tgcacaaaatatacatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaactcctcaacccgtttgatatgggagtgattttcgttcta 312  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  27762431 tgcacaaaatatacatggaggccgaatacaaatatgttgttcaacctcaaacaagactaaactcctcaacccgtttggtatgggagtgattttcgttgta 27762530  T
Q  313 ccttatccacattatttacacaactgtagtcatcttgccctgtttt 358  Q
    ||||||||||||||||||||||||||||||||| || |||||||||    
T  27762531 ccttatccacattatttacacaactgtagtcatgttaccctgtttt 27762576  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 14705233 - 14705282
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 274  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||||||    
T  14705233 acatggaggctgaatacaaaccagttgttcaacctcaaagaagactaaac 14705282  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 16382724 - 16382675
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 274  Q
    |||||||||| |||||||||| || | |||||||||||| ||||||||||    
T  16382724 acatggaggcggaatacaaacctgcttttcaacctcaaagaagactaaac 16382675  T

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Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 56406 - 56470
Alignment:
Q  210 gcatgcacaaaatatacatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 274  Q
    ||||||| |||||  |||||||||| |||||||||| ||||||||||||||||  ||||||||||    
T  56406 gcatgcataaaattcacatggaggctgaatacaaacctgttgttcaacctcaacgaagactaaac 56470  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 24438334 - 24438379
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 270  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  24438334 acatggaggctgaatacaaaccagttgttcaacctcaaagaagact 24438379  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 22942907 - 22942952
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 270  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  22942907 acatggaggctgaatacaaaccagttgttcaacctcaaataagact 22942952  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 23865351 - 23865396
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 270  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  23865351 acatggaggctgaatacaaaccagttgttcaacctcaaataagact 23865396  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 5893778 - 5893733
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 270  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  5893778 acatggaggctgaatacaaaccagttgttcaacctcaaagaagact 5893733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 18502406 - 18502361
Alignment:
Q  225 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 270  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  18502406 acatggaggctgaatacaaaccagttgttcaacctcaaagaagact 18502361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 3287233 - 3287169
Alignment:
Q  210 gcatgcacaaaatatacatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 274  Q
    |||||||||||||| || ||||||  |||||||||| ||| |||||||| |||| ||| ||||||    
T  3287233 gcatgcacaaaatacacttggaggttgaatacaaacttgtcgttcaaccacaaagaaggctaaac 3287169  T

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