View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14181_high_12 (Length: 262)

Name: NF14181_high_12
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14181_high_12
NF14181_high_12
[»] chr2 (4 HSPs)
chr2 (16-251)||(33026372-33026607)
chr2 (29-252)||(33037868-33038091)
chr2 (29-244)||(33020038-33020253)
chr2 (135-236)||(33023912-33024013)
[»] chr6 (1 HSPs)
chr6 (82-239)||(24417650-24417804)
[»] scaffold1004 (1 HSPs)
scaffold1004 (59-245)||(1867-2053)
[»] scaffold0760 (1 HSPs)
scaffold0760 (59-245)||(4362-4548)
[»] chr7 (1 HSPs)
chr7 (52-101)||(27755555-27755604)
[»] chr3 (12 HSPs)
chr3 (59-102)||(763705-763748)
chr3 (59-102)||(9585279-9585322)
chr3 (188-245)||(9608626-9608683)
chr3 (39-108)||(44001473-44001542)
chr3 (186-226)||(771770-771810)
chr3 (65-105)||(783949-783989)
chr3 (52-102)||(9587322-9587372)
chr3 (186-239)||(784070-784123)
chr3 (76-105)||(7430652-7430681)
chr3 (132-165)||(7443203-7443236)
chr3 (186-239)||(9587459-9587512)
chr3 (59-116)||(43991813-43991870)
[»] scaffold0044 (1 HSPs)
scaffold0044 (135-230)||(88876-88971)
[»] chr1 (3 HSPs)
chr1 (66-104)||(51854806-51854844)
chr1 (66-104)||(51858465-51858503)
chr1 (59-104)||(51829632-51829677)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 33026607 - 33026372
Alignment:
Q  16 cacaaagttcttatcaaacgatccttctcaaaatccggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaac 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026607 cacaaagttcttatcaaacgatccttctcaaaatctggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaac 33026508  T
Q  116 tcacattgtcgaacgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026507 tcacattgtcgaacgacatccaattaacagtgccactcaaaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagt 33026408  T
Q  216 atctgtacccaaagtatgaacacttacttcctctct 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  33026407 atctgtacccaaagtatgaacacttacttcctctct 33026372  T

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Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 33038091 - 33037868
Alignment:
Q  29 tcaaacgatccttctcaaaatccggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaactcacattgtcgaa 128  Q
    ||||| |||| ||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||  |||||||||| | ||| ||    
T  33038091 tcaaaggatcattctcaatatcaggcagcgaaagcgtttgatacgattccttctccaaatcaagagaaacaatgacgcacaaagaactcacttcgtctaa 33037992  T
Q  129 cgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaa 228  Q
    ||||| |||||||||||||||||  |||||||||||| | | |  ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  33037991 cgacaaccaattaacagtgccaccgacaaatattccatacccacaaaacgggccagaatatgggaagtctggtatccttctccaagtatccgtacccaaa 33037892  T
Q  229 gtatgaacacttacttcctctctg 252  Q
    ||||||||||||||||||||||||    
T  33037891 gtatgaacacttacttcctctctg 33037868  T

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Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 33020253 - 33020038
Alignment:
Q  29 tcaaacgatccttctcaaaatccggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaactcacattgtcgaa 128  Q
    ||||| |||||||||| ||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||  |||||    
T  33020253 tcaaaggatccttctcgaaatcaggcagcaaaaacgtttgatacgactccttctccaaatcaagagaaacaatgacacacggagaactcacatcttcgaa 33020154  T
Q  129 cgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaa 228  Q
     | || ||||||||| ||||||||||||||||||||| | | |  | ||||||||  | ||||||||||||||||||||||||||||||| |||||||||    
T  33020153 tgccaaccaattaactgtgccactcacaaatattccatacccacgacacgggccaaaacatgggaagtctggtatccttctccaagtatccgtacccaaa 33020054  T
Q  229 gtatgaacacttactt 244  Q
    ||||||||||||||||    
T  33020053 gtatgaacacttactt 33020038  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 33024013 - 33023912
Alignment:
Q  135 ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatga 234  Q
    |||||||||| ||| ||||||||||||||| || | |  ||||| ||||  ||||||||||| ||| ||||||| ||| ||||  ||| |||||||||||    
T  33024013 ccaattaacattgcgactcacaaatattcccaacccacaaaacgagccaaaatatgggaagtttggcatccttcaccatgtattcgtatccaaagtatga 33023914  T
Q  235 ac 236  Q
    ||    
T  33023913 ac 33023912  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 24417650 - 24417804
Alignment:
Q  82 tccaaatcaagagaaacaatgacacaggaagaactcacattgtcgaacgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggc 181  Q
    |||||||||||||||||||||| | | |||||||   ||| ||| | |  || |||||||| ||||||||||||||||||||| || ||||  ||| |||    
T  24417650 tccaaatcaagagaaacaatgaaaaacgaagaac---catcgtctaccaccaaccaattaatagtgccactcacaaatattcccaaccgatgtaactggc 24417746  T
Q  182 cattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacact 239  Q
     |  ||||||||||||| ||||| ||||||||| |||||||||||  |||||||||||    
T  24417747 gagaatatgggaagtcttgtatcgttctccaagaatctgtacccagggtatgaacact 24417804  T

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Target: scaffold1004 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 2053 - 1867
Alignment:
Q  59 aaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaactcacattgtcgaacgacatccaattaacagtgccactcacaaa 158  Q
    ||||| |||||||  |||| |||  |||||||||||||||||||||||| |||||| |||||   || || | || |||||||||| ||||| |||||||    
T  2053 aaagcttttgatatgactctttcgtcaaatcaagagaaacaatgacacacgaagaagtcacaccatctaatgccaaccaattaacattgccattcacaaa 1954  T
Q  159 tattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacacttacttc 245  Q
    ||||||  | | |   ||||| | | |||||||||||||  ||||| || |||||| ||  |||||||||||||||||||| |||||    
T  1953 tattcctgacccacataacggactagtatatgggaagtcatgtatctttatccaagaatacgtacccaaagtatgaacactaacttc 1867  T

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Target: scaffold0760 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 4548 - 4362
Alignment:
Q  59 aaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaactcacattgtcgaacgacatccaattaacagtgccactcacaaa 158  Q
    ||||| |||||||  |||| |||  |||||||||||||||||||||||| |||||| |||||   || || | || |||||||||| ||||| |||||||    
T  4548 aaagcttttgatatgactctttcgtcaaatcaagagaaacaatgacacacgaagaagtcacaccatctaatgccaaccaattaacattgccattcacaaa 4449  T
Q  159 tattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacacttacttc 245  Q
    ||||||  | | |   ||||| | | |||||||||||||  ||||| || |||||| ||  |||||||||||||||||||| |||||    
T  4448 tattcctgacccacataacggactagtatatgggaagtcatgtatctttatccaagaatacgtacccaaagtatgaacactaacttc 4362  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 27755604 - 27755555
Alignment:
Q  52 ggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaat 101  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  27755604 ggcagcgcaagcttttcatacaactccttctccaaatcaagagaaacaat 27755555  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 763705 - 763748
Alignment:
Q  59 aaagcgtttgatacaactccttctccaaatcaagagaaacaatg 102  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  763705 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 763748  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 9585279 - 9585322
Alignment:
Q  59 aaagcgtttgatacaactccttctccaaatcaagagaaacaatg 102  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  9585279 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 9585322  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 9608626 - 9608683
Alignment:
Q  188 atgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacacttacttc 245  Q
    ||||||||||| ||||||||||||||  ||| || ||||||||||||||||| |||||    
T  9608626 atgggaagtcttgtatccttctccaataatcagtgcccaaagtatgaacactaacttc 9608683  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 44001542 - 44001473
Alignment:
Q  39 cttctcaaaatccggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacag 108  Q
    |||||||||||| ||||||||||||  ||||||  ||||||| || | |||||||||||||||| |||||    
T  44001542 cttctcaaaatcaggcagcgaaagctgttgatatgactccttttcaagatcaagagaaacaatgtcacag 44001473  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 771770 - 771810
Alignment:
Q  186 atatgggaagtctggtatccttctccaagtatctgtaccca 226  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  771770 atatgggaagtcttgtatccttctccaagaatctgtaccca 771810  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 783949 - 783989
Alignment:
Q  65 tttgatacaactccttctccaaatcaagagaaacaatgaca 105  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  783949 tttgatacgactcattctccaaatcaagagaaacaatgaca 783989  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 9587322 - 9587372
Alignment:
Q  52 ggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatg 102  Q
    |||||| ||||  |||||||| |||| ||||||||||||||||||||||||    
T  9587322 ggcagcaaaagattttgatacgactcgttctccaaatcaagagaaacaatg 9587372  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 784070 - 784123
Alignment:
Q  186 atatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacact 239  Q
    ||||||||||||| | ||||| ||||||| ||| ||||||||||||| ||||||    
T  784070 atatgggaagtcttggatcctcctccaagaatcggtacccaaagtataaacact 784123  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 7430652 - 7430681
Alignment:
Q  76 tccttctccaaatcaagagaaacaatgaca 105  Q
    ||||||||||||||||||||||||||||||    
T  7430652 tccttctccaaatcaagagaaacaatgaca 7430681  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 7443203 - 7443236
Alignment:
Q  132 catccaattaacagtgccactcacaaatattcca 165  Q
    |||||||||||||||||||| |||||||||||||    
T  7443203 catccaattaacagtgccacccacaaatattcca 7443236  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 9587459 - 9587512
Alignment:
Q  186 atatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacact 239  Q
    ||||||||||||| | ||||| ||||||||||  ||||||||||||| ||||||    
T  9587459 atatgggaagtcttggatcctcctccaagtattggtacccaaagtataaacact 9587512  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 43991870 - 43991813
Alignment:
Q  59 aaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacaggaagaact 116  Q
    ||||| |||||||  ||||| ||||||||||||||||||||||| |||| || |||||    
T  43991870 aaagcttttgataagactccgtctccaaatcaagagaaacaatggcacaagaggaact 43991813  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 88971 - 88876
Alignment:
Q  135 ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagt 230  Q
    ||||||||||||||||||||||||||||||  ||  ||  || || |||| |||||||||||||  ||| |||||||||  ||| ||||| |||||    
T  88971 ccaattaacagtgccactcacaaatattcccgattcatgtaagggaccatcatatgggaagtcttttattcttctccaataatcagtacctaaagt 88876  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 51854844 - 51854806
Alignment:
Q  66 ttgatacaactccttctccaaatcaagagaaacaatgac 104  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  51854844 ttgatacaacccattctccaaatcaagagaaacaatgac 51854806  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 51858503 - 51858465
Alignment:
Q  66 ttgatacaactccttctccaaatcaagagaaacaatgac 104  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  51858503 ttgacacaactcattctccaaatcaagagaaacaatgac 51858465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 51829677 - 51829632
Alignment:
Q  59 aaagcgtttgatacaactccttctccaaatcaagagaaacaatgac 104  Q
    |||||||||||||| |||||||||  ||||||| ||||||||||||    
T  51829677 aaagcgtttgatacgactccttctgtaaatcaaaagaaacaatgac 51829632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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