View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14181_high_3 (Length: 526)

Name: NF14181_high_3
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14181_high_3
NF14181_high_3
[»] chr4 (30 HSPs)
chr4 (227-510)||(53014253-53014535)
chr4 (153-290)||(7852508-7852654)
chr4 (227-316)||(20394608-20394697)
chr4 (153-285)||(7444349-7444491)
chr4 (156-313)||(41462022-41462187)
chr4 (155-290)||(51834910-51835054)
chr4 (153-225)||(8261178-8261250)
chr4 (153-225)||(8274595-8274667)
chr4 (174-313)||(8297844-8297992)
chr4 (183-313)||(35777693-35777832)
chr4 (226-312)||(37440800-37440886)
chr4 (153-290)||(45900113-45900259)
chr4 (226-279)||(49084447-49084500)
chr4 (226-285)||(49400613-49400672)
chr4 (156-274)||(50427001-50427128)
chr4 (182-291)||(47995730-47995848)
chr4 (153-274)||(50341831-50341961)
chr4 (223-291)||(48337551-48337619)
chr4 (224-279)||(25115307-25115362)
chr4 (223-313)||(24175442-24175531)
chr4 (223-313)||(27953084-27953173)
chr4 (224-313)||(43969229-43969319)
chr4 (153-222)||(23605631-23605700)
chr4 (239-320)||(28005302-28005383)
chr4 (224-285)||(34391751-34391812)
chr4 (154-274)||(37138127-37138256)
chr4 (159-199)||(14031282-14031322)
chr4 (227-275)||(23605974-23606022)
chr4 (154-190)||(31072435-31072471)
chr4 (154-198)||(36702877-36702921)
[»] chr8 (28 HSPs)
chr8 (25-230)||(26750615-26750829)
chr8 (153-290)||(42636330-42636476)
chr8 (153-290)||(27801190-27801336)
chr8 (153-222)||(37427264-37427332)
chr8 (154-273)||(1135174-1135302)
chr8 (154-285)||(1369824-1369964)
chr8 (223-290)||(4384178-4384245)
chr8 (155-274)||(33013057-33013184)
chr8 (180-315)||(884387-884531)
chr8 (223-286)||(2888763-2888826)
chr8 (223-286)||(3146036-3146099)
chr8 (227-313)||(16723242-16723328)
chr8 (232-273)||(24695760-24695801)
chr8 (223-272)||(35901945-35901994)
chr8 (223-279)||(37813445-37813502)
chr8 (155-215)||(3146120-3146178)
chr8 (232-280)||(12544986-12545034)
chr8 (227-290)||(33724628-33724692)
chr8 (238-285)||(9735362-9735409)
chr8 (153-212)||(24733254-24733313)
chr8 (223-290)||(28207620-28207687)
chr8 (223-269)||(5588977-5589023)
chr8 (232-274)||(17081423-17081465)
chr8 (227-284)||(12954730-12954787)
chr8 (156-201)||(41429571-41429616)
chr8 (153-222)||(45197450-45197519)
chr8 (159-199)||(5293836-5293876)
chr8 (226-318)||(37564378-37564470)
[»] chr7 (25 HSPs)
chr7 (153-313)||(28770450-28770619)
chr7 (153-290)||(35496537-35496683)
chr7 (153-290)||(44537337-44537483)
chr7 (157-313)||(27123247-27123412)
chr7 (154-290)||(28663104-28663248)
chr7 (153-285)||(43234791-43234931)
chr7 (156-273)||(35923474-35923596)
chr7 (156-278)||(7653584-7653715)
chr7 (224-279)||(37158400-37158455)
chr7 (153-222)||(14651354-14651423)
chr7 (185-275)||(32051330-32051427)
chr7 (227-273)||(21727453-21727499)
chr7 (173-290)||(43224071-43224197)
chr7 (227-316)||(25886140-25886229)
chr7 (153-206)||(35731376-35731428)
chr7 (224-284)||(3692879-3692939)
chr7 (226-313)||(44592839-44592926)
chr7 (153-215)||(26239505-26239567)
chr7 (236-290)||(40754002-40754056)
chr7 (153-214)||(21727370-21727431)
chr7 (156-205)||(31902718-31902766)
chr7 (224-257)||(35731316-35731349)
chr7 (155-211)||(3692962-3693018)
chr7 (226-274)||(39321028-39321076)
chr7 (153-205)||(47754472-47754524)
[»] chr1 (24 HSPs)
chr1 (153-313)||(2864116-2864283)
chr1 (179-313)||(39150555-39150698)
chr1 (153-316)||(43396979-43397153)
chr1 (183-290)||(8372991-8373098)
chr1 (224-291)||(8794411-8794478)
chr1 (223-279)||(38491228-38491284)
chr1 (223-290)||(8365499-8365566)
chr1 (153-274)||(3982277-3982406)
chr1 (223-313)||(48022396-48022486)
chr1 (180-274)||(7212785-7212883)
chr1 (225-290)||(34232752-34232817)
chr1 (153-291)||(38748686-38748832)
chr1 (223-274)||(39156273-39156324)
chr1 (224-274)||(32562397-32562447)
chr1 (232-276)||(17552843-17552887)
chr1 (222-285)||(26811274-26811337)
chr1 (223-290)||(47187864-47187931)
chr1 (153-203)||(34232675-34232725)
chr1 (223-316)||(36563673-36563767)
chr1 (157-257)||(39914576-39914682)
chr1 (154-215)||(34409813-34409874)
chr1 (223-272)||(44329610-44329659)
chr1 (232-285)||(44829273-44829326)
chr1 (227-279)||(2995018-2995070)
[»] scaffold0036 (1 HSPs)
scaffold0036 (155-326)||(62491-62671)
[»] chr2 (18 HSPs)
chr2 (183-316)||(19890183-19890325)
chr2 (226-313)||(20064884-20064971)
chr2 (156-313)||(1334851-1335017)
chr2 (155-285)||(31452313-31452451)
chr2 (156-272)||(34904755-34904880)
chr2 (156-274)||(41933143-41933270)
chr2 (223-285)||(4762350-4762412)
chr2 (227-276)||(9173754-9173803)
chr2 (223-268)||(29239292-29239336)
chr2 (223-279)||(11944916-11944972)
chr2 (223-279)||(14295635-14295691)
chr2 (156-279)||(31017275-31017407)
chr2 (223-318)||(37993046-37993141)
chr2 (245-318)||(27133044-27133117)
chr2 (153-205)||(2393005-2393057)
chr2 (227-279)||(7673201-7673253)
chr2 (156-212)||(35443460-35443516)
chr2 (153-205)||(42967047-42967099)
[»] chr5 (18 HSPs)
chr5 (153-292)||(18229566-18229714)
chr5 (153-290)||(30104800-30104946)
chr5 (182-313)||(9276573-9276712)
chr5 (153-313)||(30501103-30501273)
chr5 (153-313)||(30541446-30541616)
chr5 (227-324)||(3140776-3140873)
chr5 (153-285)||(17692263-17692403)
chr5 (154-274)||(16667257-16667386)
chr5 (153-316)||(34899101-34899270)
chr5 (156-282)||(8221126-8221261)
chr5 (223-316)||(2918640-2918733)
chr5 (173-222)||(7968463-7968512)
chr5 (153-221)||(39558731-39558799)
chr5 (156-225)||(8208249-8208318)
chr5 (156-220)||(5815038-5815102)
chr5 (153-201)||(14166725-14166773)
chr5 (226-274)||(15720079-15720127)
chr5 (153-225)||(23117191-23117263)
[»] chr6 (13 HSPs)
chr6 (156-274)||(17215650-17215777)
chr6 (153-266)||(32823697-32823819)
chr6 (191-313)||(11720889-11721011)
chr6 (180-274)||(7421684-7421787)
chr6 (226-279)||(2692476-2692529)
chr6 (181-257)||(31855083-31855168)
chr6 (223-279)||(27778761-27778818)
chr6 (223-275)||(1840994-1841046)
chr6 (232-290)||(19293505-19293563)
chr6 (223-317)||(30739568-30739662)
chr6 (155-275)||(23399121-23399250)
chr6 (154-206)||(18737852-18737903)
chr6 (232-272)||(26669331-26669371)
[»] chr3 (15 HSPs)
chr3 (153-318)||(48180135-48180309)
chr3 (155-285)||(29083865-29084005)
chr3 (227-290)||(42846053-42846116)
chr3 (156-275)||(46093528-46093646)
chr3 (226-285)||(49362400-49362459)
chr3 (224-279)||(52638202-52638257)
chr3 (153-190)||(39400242-39400279)
chr3 (155-285)||(24791498-24791638)
chr3 (224-271)||(16662992-16663039)
chr3 (223-269)||(22730529-22730575)
chr3 (159-192)||(3027084-3027117)
chr3 (223-260)||(26900066-26900103)
chr3 (153-190)||(31625305-31625342)
chr3 (260-313)||(50604026-50604079)
chr3 (153-193)||(17517655-17517695)
[»] scaffold0204 (1 HSPs)
scaffold0204 (223-291)||(25073-25141)
[»] scaffold1444 (1 HSPs)
scaffold1444 (226-279)||(978-1031)
[»] scaffold0119 (1 HSPs)
scaffold0119 (232-272)||(1422-1462)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 227 - 510
Target Start/End: Original strand, 53014253 - 53014535
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactcatgttttt 326  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||  ||| ||| || ||||| ||||||||| |||| ||| |||    
T  53014253 attggaaattgtaatagttaattttttaaaaagataattactaaatttaggatgtttaaaaagtgcccaag-gacacccgttaacaagactcgtgtcttt 53014351  T
Q  327 atctttaagcgtctcaaggtcattcaatagaatggtgaaatctaaattttgcaaaagaaatttgcaagtgaatttgaagaagtttaaaataataaattca 426  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  53014352 atctttaagcttctcgaggtcattcaatagaatggtgaaatctaaattttgcaaaagaaatttgcaagttaatttgaaaaagtttaaaataataaattca 53014451  T
Q  427 aagctcattttcatggcaattgaagaaaaattaatgcttacaagataacaaaatagcaaaaagtgtagattttaaagttaaact 510  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  53014452 aagctcattttcatgccaattgaagaaaaattaatgcttacaagataacaaaatagcagaaagtgtagattttaaagttaaact 53014535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 7852508 - 7852654
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||| |||||||||||  |||| |||||||||||||||||||||||||||| |||||||| ||||||         |||||||| ||||||||||||    
T  7852508 gggaaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatag 7852607  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    || | |||||||||  ||||||||||||||||||||| |||| ||||    
T  7852608 ttaattttttaaaagaataattactaaatttaggatgcttaaagagt 7852654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 20394697 - 20394608
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    |||| |||||||||||||| |||||||||||  ||||||||||||||| ||||| |||| |||| | || ||||||||||||||||||||    
T  20394697 attggaaattgtaatagttcactttttaaaagaataattactaaatttgggatgcttaaagagtgctctggagacactcgttaacaaaac 20394608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 285
Target Start/End: Original strand, 7444349 - 7444491
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggag-cactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaata 242  Q
    ||||||||||||||||||| ||| ||| |||||||||| ||||||||||| |||| |||||| | ||||||         |||||||| |||||||||||    
T  7444349 gggaaatgttaacgagtgc-tcccgagacactctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaata 7444447  T
Q  243 gttgactttttaaaaag-ataattactaaatttaggatgtttaa 285  Q
    ||||||||||| ||||| ||||||||||||||| ||||| ||||    
T  7444448 gttgacttttttaaaagtataattactaaatttgggatgcttaa 7444491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 313
Target Start/End: Complemental strand, 41462187 - 41462022
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatgcattgta---------aattgtaatagttg 246  Q
    |||||||||||||||| | || ||||||||||||||| ||||||||||||| |||||||| ||| ||||| |||  |         ||||||||||||||    
T  41462187 aaatgttaacgagtgccttcg-agcactctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttg 41462089  T
Q  247 actttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    |||||||||||  ||||||||||||| ||  ||| |||| |||| | | || |||||||||||||||    
T  41462088 actttttaaaagaataattactaaatataaaatgcttaaagagtgctccagggacactcgttaacaa 41462022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 290
Target Start/End: Complemental strand, 51835054 - 51834910
Alignment:
Q  155 gaaatgttaacgagtgcgtccggag-cactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagt 244  Q
    ||||||||||||||||  ||| ||| |||||||||| |||||||||||||||  |||||||| ||||||         |||||||| ||||| |||||||    
T  51835054 gaaatgttaacgagtgt-tcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagt 51834956  T
Q  245 tgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||||||||  |||||| |||||||||||||| |||| ||||    
T  51834955 tgactttttaaaagaataattgctaaatttaggatgcttaaagagt 51834910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 8261250 - 8261178
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg 225  Q
    ||||||||||||||||||  || || |||||||| ||||||||||||||||||| |||||||| |||||||||    
T  8261250 gggaaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatg 8261178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 8274667 - 8274595
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg 225  Q
    ||||||||||||||||||  || || |||||||| ||||||||||||||||||| |||||||| |||||||||    
T  8274667 gggaaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatg 8274595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 313
Target Start/End: Complemental strand, 8297992 - 8297844
Alignment:
Q  174 ccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaaagataat 264  Q
    |||| ||| |||||||||||||||||||||||| |||||||| ||| ||         |||||||| ||||||||| ||||||| ||||||||  |||||    
T  8297992 ccggggcaatctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataat 8297893  T
Q  265 tactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    |||||||||| ||||| |||| |||| |||  | | |||||||||||||    
T  8297892 tactaaatttgggatgcttaaagagtgccccgggggcactcgttaacaa 8297844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 313
Target Start/End: Original strand, 35777693 - 35777832
Alignment:
Q  183 tctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatt 273  Q
    |||||||||||||||||| ||||| |||||||| ||||||         |||||||  |||||||||||||| |||||||||||  ||||||||||||||    
T  35777693 tctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaatt 35777792  T
Q  274 taggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    | ||||| |||| ||||| |||  || |||| ||||||||    
T  35777793 tgggatggttaaagagtatcctgaaggcactagttaacaa 35777832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 37440886 - 37440800
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaaca 312  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||| | ||||  ||| |  |||||||||||||    
T  37440886 cattgaaaattgtaatagttgactttttaaaataataattactaaatttagcatgtttcaagagtgtcctgggaacactcgttaaca 37440800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 45900113 - 45900259
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||  | || |||||||||||||||||||| ||||||| ||   ||| ||||||         |||||||| ||||||| ||||    
T  45900113 gggaaatgttaacgagtgccccgggggcactctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgatag 45900212  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||| |||||  |||||| |||||||||||||| |||| ||||    
T  45900213 ttgactttataaaagaataattgctaaatttaggatgcttaaagagt 45900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 49084447 - 49084500
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  49084447 cattgaaaattgtaatagttgactttttaaaagaataattactaaatttaggat 49084500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 49400672 - 49400613
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    ||||| |||||||||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  49400672 cattggaaattgtaatagttgattttttaaaagaataattactaaatttaggatgcttaa 49400613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 50427128 - 50427001
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatagttg 246  Q
    ||||||||||||||||  | |  ||||||||||| |||||||||||||||  |||||||| |||||| ||         ||||| |||||||||||||||    
T  50427128 aaatgttaacgagtgcccctgtggcactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaatagttg 50427029  T
Q  247 actttttaaaaagataattactaaattt 274  Q
    |||||| ||||  |||||||||||||||    
T  50427028 acttttcaaaagaataattactaaattt 50427001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 47995730 - 47995848
Alignment:
Q  182 ctctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaaagataattactaaat 272  Q
    ||||||||||||||||||| ||||| |||||||| ||||||         |||||||| ||||||||||| || |||||||||||   ||||||||||||    
T  47995730 ctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgtaataattaactttttaaaagagtaattactaaat 47995829  T
Q  273 ttaggatgtttaaggagta 291  Q
    |||| ||| |||| |||||    
T  47995830 ttagaatgcttaaagagta 47995848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 50341831 - 50341961
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||| ||||  | ||| | ||||||||||||||||| |||||||  ||| |||| ||||||         |||| ||| ||||||||||||    
T  50341831 gggaaatgttaacaagtgttttcggggtactctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatag 50341930  T
Q  244 ttgactttttaaaaagataattactaaattt 274  Q
    ||||||||||||||  |||||||||||||||    
T  50341931 ttgactttttaaaagaataattactaaattt 50341961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 48337619 - 48337551
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagta 291  Q
    |||||||| |||||||||||||||| |||||||| | ||||||  |||||| ||||||||||| |||||    
T  48337619 atgcattgaaaattgtaatagttgattttttaaagaaataattgttaaattaaggatgtttaaagagta 48337551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 25115307 - 25115362
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  25115307 tgcattggaaattgtaatagttaactttttaaaataataattactaaattttggat 25115362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 24175442 - 24175531
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    |||||||  |||||||||||||| |||||| ||| | ||| ||||||||||||||||| |||| ||||  ||||  |||||||||||||||    
T  24175442 atgcatttaaaattgtaatagtttacttttaaaaga-atatttactaaatttaggatgcttaaagagtgtcctaaggacactcgttaacaa 24175531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 27953084 - 27953173
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    |||||||| |||||||||||||| |||||||||||  |||| ||||||||||  |||| |||| |||| | |  |||||||||||||||||    
T  27953084 atgcattgaaaattgtaatagttaactttttaaaataataa-tactaaatttgagatgcttaaagagtgctccggagacactcgttaacaa 27953173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 43969229 - 43969319
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataa---ttactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||||| |||||||||||||||| |||||||||| ||||   ||| |||||||| |||||||||| |||| | |||| ||||||||||||||    
T  43969229 tgcattgaaaattgtaatagttga-tttttaaaaaaataattgttattaaatttaagatgtttaagaagtatcataga-acactcgttaacaa 43969319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 23605631 - 23605700
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt 222  Q
    ||||||||||||||||||  |||||   ||| |||||||||||||||| ||||| |||||||| ||||||    
T  23605631 gggaaatgttaacgagtgtctccgggatactttttaagcactttaaatggtaagtttttaatgaaaagtt 23605700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 28005302 - 28005383
Alignment:
Q  239 aatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactcat 320  Q
    |||| |||||||||| ||||||||||| || | ||||| |||||||| |||||||   || |||||||||||||| ||||||    
T  28005302 aatatttgacttttttaaaagataattgcttattttagtatgtttaaagagtacctcggatacactcgttaacaagactcat 28005383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 34391751 - 34391812
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    ||||||| |||||||||||  ||||||| |||||  ||||||||||||||| |||| |||||    
T  34391751 tgcattggaaattgtaataactgactttataaaagaataattactaaattttggatatttaa 34391812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 37138127 - 37138256
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagt 244  Q
    |||||||||||||||||| |||||  ||||||||||||| ||||| ||| ||| | || ||| ||||||          ||||||| ||||| |||||||    
T  37138127 ggaaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagt 37138226  T
Q  245 tgactttttaaaaagataattactaaattt 274  Q
    |||||||||||||  ||| || ||||||||    
T  37138227 tgactttttaaaagaatagttgctaaattt 37138256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 14031282 - 14031322
Alignment:
Q  159 tgttaacgagtgcgtccggagcactctttaagcactttaaa 199  Q
    |||||||||||||  |||| |||||||||||||||||||||    
T  14031282 tgttaacgagtgcacccggtgcactctttaagcactttaaa 14031322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 23605974 - 23606022
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaattta 275  Q
    |||| ||||||||||| || |||||||||||  ||||||||||||||||    
T  23605974 attggaaattgtaataattaactttttaaaagaataattactaaattta 23606022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 31072435 - 31072471
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaag 190  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  31072435 ggaaatgttaacgagtgcctccggggcactctttaag 31072471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 36702921 - 36702877
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaa 198  Q
    |||||||||||||||| | |||||  |||||||||||||||||||    
T  36702921 ggaaatgttaacgagttcctccgggacactctttaagcactttaa 36702877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 26750829 - 26750615
Alignment:
Q  25 tgtgttgcgagtaaatggcccaaatgcggaacttgggtcttattggattgagtctatgaagtcttattggattgggtctatgaatatgggtcttatagtg 124  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26750829 tgtgttgcgagtaaattgcccaaatgcggaacttgggtcttattggattgggtctatgaagtcttattggattgggtctatgaatatgggtcttatagtg 26750730  T
Q  125 ttttgctcggttcagaac---------attnnnnnnngggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatg 215  Q
    ||||||||| ||||||||         |||       ||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  26750729 ttttgctcgattcagaacattagtgctattaaaaaaagggaaatgttaacgagtgcgctcggagcactctttaagcactttaaatagtaagattttaatg 26750630  T
Q  216 gaaagttatgcattg 230  Q
     ||| ||||||||||    
T  26750629 aaaaattatgcattg 26750615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 42636330 - 42636476
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||| ||||||         |||||||||||||||||||||    
T  42636330 gggaaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaatag 42636429  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    ||||||||||  ||  ||||||||||||||| ||||| |||| ||||    
T  42636430 ttgacttttttgaataataattactaaatttgggatgcttaaagagt 42636476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 27801190 - 27801336
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||    || | |||||||||||||||||||||||||| |||||||  ||||||         |||||||| ||||||||||||    
T  27801190 gggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaatag 27801289  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    ||||||||||||||  ||||||||||||||||| ||| |||| ||||    
T  27801290 ttgactttttaaaagaataattactaaatttagaatgattaaagagt 27801336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 37427332 - 37427264
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt 222  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||| ||||||    
T  37427332 gggaaatgttaacgagtgcctccgga-cactctttaagcactttaaatggtaagattttaatgaaaagtt 37427264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 1135302 - 1135174
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagt 244  Q
    ||||||||||||||||||   | ||||||||||||| |||||||||| ||||| |||||| | ||||||         || ||||| |||||||||||||    
T  1135302 ggaaatgttaacgagtgccgtcagagcactctttaaacactttaaatggtaagtttttaaggaaaagttgtatattgaatacattgaaaattgtaatagt 1135203  T
Q  245 tgactttttaaaaagataattactaaatt 273  Q
    |||||||||||||  ||||||||||||||    
T  1135202 tgactttttaaaagaataattactaaatt 1135174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 1369824 - 1369964
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttat---------gcattgtaaattgtaatagt 244  Q
    |||||||||||| ||||| ||| |  ||||||||||||||||||| || |||| |||  ||| ||||||||         |||||| ||||||| |||||    
T  1369824 ggaaatgttaacaagtgcttcctggacactctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagt 1369923  T
Q  245 tgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    |||||||||||||  |||||| |||||||||||||| ||||    
T  1369924 tgactttttaaaagaataattgctaaatttaggatgcttaa 1369964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 4384178 - 4384245
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||| |||||||||||||||| |||||||||  |||||||||||||||||| || |||| ||||    
T  4384178 atgcattggaaattgtaatagttgattttttaaaagaataattactaaatttagggtgcttaaagagt 4384245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 33013184 - 33013057
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatagtt 245  Q
    ||||||||||||||||| ||| | |||||||||||||||||||| ||||||| | || ||| |||||| ||         ||||| ||||||||||||||    
T  33013184 gaaatgttaacgagtgc-tcctgggcactctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagtt 33013086  T
Q  246 gactttttaaaaagataattactaaattt 274  Q
    ||||||||||||  ||||||  |||||||    
T  33013085 gactttttaaaagaataattgttaaattt 33013057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 884531 - 884387
Alignment:
Q  180 cactctttaagcactttaaatagtaaggttttaatggaaagttatg--------cattgtaaattgtaatagttgactttttaaaaaga-taattactaa 270  Q
    ||||||||||||||||||||| | ||| |||||||| ||| || ||        ||||| ||||||||||| |||| ||||| | |||| ||||||||||    
T  884531 cactctttaagcactttaaattgaaagtttttaatgaaaaattgtgtattaaatcattgaaaattgtaataattgatttttttataagaataattactaa 884432  T
Q  271 atttaggatgtttaaggagtaccctagagacactcgttaacaaaa 315  Q
    ||||| ||||||||| ||||   | || |||||||||||||||||    
T  884431 atttatgatgtttaaagagtgttccagtgacactcgttaacaaaa 884387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 2888763 - 2888826
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaag 286  Q
    |||||||| ||||| |||||||| |||||||||||| ||||||||||||| | ||||| |||||    
T  2888763 atgcattggaaattataatagttaactttttaaaaaaataattactaaatatgggatgcttaag 2888826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 3146099 - 3146036
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaag 286  Q
    |||||||| |||||||||||||| |||||||||||  ||||||||||||| | ||||| |||||    
T  3146099 atgcattggaaattgtaatagttaactttttaaaagaataattactaaatatgggatgcttaag 3146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 16723242 - 16723328
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    |||| |||||||| ||||||| |||||||||  |||||||| |||||| ||||| |||| |||| |||| | | |||||||||||||    
T  16723242 attgaaaattgtattagttgattttttaaaagaataattacaaaatttgggatgcttaaagagtgccctggggtcactcgttaacaa 16723328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 24695801 - 24695760
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaatt 273  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  24695801 aaattgtaatagttgactttttaaaataataattactaaatt 24695760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 35901994 - 35901945
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaat 272  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||| |||||    
T  35901994 atgcattggaaattgtaataattgactttttaaaaaaataattattaaat 35901945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 37813445 - 37813502
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaag-ataattactaaatttaggat 279  Q
    |||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  37813445 atgcattggaaattgtaatggttgacttttttaaaagaataattactaaatttgggat 37813502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 3146178 - 3146120
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatg 215  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||||||||||| ||||||||    
T  3146178 gaaatgttaa-gagtgcccccgga-cactctttaagcactttaaatagtaagtttttaatg 3146120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 12545034 - 12544986
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaatttaggatg 280  Q
    ||||| |||||||||||||||| |||  |||||||||||||||||||||    
T  12545034 aaattataatagttgactttttgaaataataattactaaatttaggatg 12544986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 33724628 - 33724692
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaaga-taattactaaatttaggatgtttaaggagt 290  Q
    |||| |||||||||  ||||| |||||||||||| |||||| |||||||||||||||||| ||||    
T  33724628 attgaaaattgtaactgttgattttttaaaaagaataattattaaatttaggatgtttaaagagt 33724692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 9735362 - 9735409
Alignment:
Q  238 taatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    |||||||||||||||| |||| ||||||| ||||||||| ||||||||    
T  9735362 taatagttgacttttttaaaaaataattattaaatttagaatgtttaa 9735409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 24733313 - 24733254
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggtttta 212  Q
    ||||||||||||||||||  ||||| |||||||||||| || || ||||||||| |||||    
T  24733313 gggaaatgttaacgagtgtctccggggcactctttaagtacctttaatagtaagttttta 24733254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 28207687 - 28207620
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||| ||||||||||||||||||||||||||  || |||  ||||||| ||||| |||| ||||    
T  28207687 atgcattggaaattgtaatagttgactttttaaaagaattattgttaaatttgggatgcttaaagagt 28207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 5589023 - 5588977
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattacta 269  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||||    
T  5589023 atgcattgaaaattataatagttgactttttaaaagaataattacta 5588977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 17081423 - 17081465
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaattt 274  Q
    |||||||||||||||||||||| |||| |||||| ||||||||    
T  17081423 aaattgtaatagttgacttttttaaaaaataattgctaaattt 17081465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 12954787 - 12954730
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgttta 284  Q
    |||| ||||| |||||||||| |||| ||||| |||||||||||||||  ||||||||    
T  12954787 attgaaaattataatagttgatttttaaaaaaaataattactaaatttgagatgttta 12954730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 41429571 - 41429616
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaata 201  Q
    |||||||||||||||| |||| | ||||||||||||| ||||||||    
T  41429571 aaatgttaacgagtgcttccgtatcactctttaagcaatttaaata 41429616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 45197519 - 45197450
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt 222  Q
    ||||||||||||||||||| ||| |  |||||||||| ||| |||||||||||  |||| ||| ||||||    
T  45197519 gggaaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttttatgaaaagtt 45197450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 5293876 - 5293836
Alignment:
Q  159 tgttaacgagtgcgtccggagcactctttaagcactttaaa 199  Q
    ||||||||||||| ||||||||| |||||||||| ||||||    
T  5293876 tgttaacgagtgcctccggagcagtctttaagcattttaaa 5293836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 37564378 - 37564470
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactc 318  Q
    ||||| |||||| | || |||||||||| |||  |||||| || ||||||| |||||||| ||||  || |||| ||||||||||||| ||||    
T  37564378 cattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagactc 37564470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 153 - 313
Target Start/End: Complemental strand, 28770619 - 28770450
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||| ||||||         |||||||| ||||||||||||    
T  28770619 gggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatag 28770520  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||||||| ||||  ||||||||||| ||| ||||| |||| |||| |||  ||| |||||||||||||    
T  28770519 ttgacttttcaaaagaataattactaattttgggatgcttaaagagtgccccggaggcactcgttaacaa 28770450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 35496537 - 35496683
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||  |||| ||||||||||| |||||||||| ||||| |||||||| ||| ||         |||||||| ||||||||||||    
T  35496537 gggaaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatag 35496636  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    ||||||||||||||| ||| ||||||||||| ||||| |||| ||||    
T  35496637 ttgactttttaaaaatatagttactaaattttggatgcttaaagagt 35496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 44537483 - 44537337
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatag 243  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||||||| |||||||||         || || ||||| ||||||    
T  44537483 gggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgtattatatacaatggaaattataatag 44537384  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    ||||||||||||||  ||||||||||||| | ||||| |||| ||||    
T  44537383 ttgactttttaaaagaataattactaaatatgggatgcttaaagagt 44537337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 157 - 313
Target Start/End: Complemental strand, 27123412 - 27123247
Alignment:
Q  157 aatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttga 247  Q
    |||||||||||||||  |||| |||||||||||||||||||||| ||||| |||||| | ||||||         |||||||| ||||||||||||||||    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga 27123313  T
Q  248 ctttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||||||||  || |||||||||||| ||||| |||| |||| |||  | | |||||||||||||    
T  27123312 ctttttaaaagaatgattactaaatttgggatgcttaaagagtgccccgggggcactcgttaacaa 27123247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 28663104 - 28663248
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagt 244  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||         |||||||| |||||||||||||    
T  28663104 ggaaatgttaacgaatgcctccggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagt 28663203  T
Q  245 tgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||||||||  |||||| ||||| ||| |||| |||| ||||    
T  28663204 tgactttttaaaagaataatt-ctaaagttatgatgcttaaagagt 28663248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 43234931 - 43234791
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatgcat---------tgtaaattgtaatag 243  Q
    |||||||||||||||||||   ||| |||||||||||||||||||||||||||  |||||||| ||||||||| ||         || ||||||||||||    
T  43234931 gggaaatgttaacgagtgccctcgg-gcactctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatag 43234833  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    || | |||||||||  ||||||||||||| ||||||| ||||    
T  43234832 tttattttttaaaagaataattactaaatataggatgcttaa 43234791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 35923474 - 35923596
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt-----atgcattgtaaattgtaatagttgactt 250  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||| |||| ||||| || ||||||     |||||||| |||||||||||||| | ||    
T  35923474 aaatgttaacgagtgtctccggaacactctttaaacactttaaataataagtttttattgaaaagttattgaatgcattggaaattgtaatagttta-tt 35923572  T
Q  251 tttaaaaag-ataattactaaatt 273  Q
    ||||||||| ||||| ||||||||    
T  35923573 tttaaaaagaataatgactaaatt 35923596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 7653715 - 7653584
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttg 246  Q
    |||||||||||||| |  ||||  |||||||||||||||||||| |||||| |||||||| ||||||         ||| |||| ||||| |||||||||    
T  7653715 aaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaatgaattggaaattataatagttg 7653616  T
Q  247 actttttaaaaagataattactaaatttagga 278  Q
    |||||||||||  ||| || ||||||||||||    
T  7653615 actttttaaaagaatagttgctaaatttagga 7653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 37158400 - 37158455
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  37158400 tgcattgaaaattgtaatagttgactttttaaaataataattactaaattttggat 37158455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 14651354 - 14651423
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt 222  Q
    |||||||||||||||||||   ||| ||||||||||||||||| |||||||| | |||||||| ||||||    
T  14651354 gggaaatgttaacgagtgccctcggggcactctttaagcacttaaaatagtaggtttttaatgaaaagtt 14651423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 32051330 - 32051427
Alignment:
Q  185 tttaagcactttaaatagtaaggttttaatggaaagttat-------gcattgtaaattgtaatagttgactttttaaaaagataattactaaattta 275  Q
    |||||||||||||||||||||| |||||||| ||| ||||       ||  || ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  32051330 tttaagcactttaaatagtaagtttttaatgaaaaattatattgaatgctatgaaaattgtcatagttgacttttcaaaaaaataattactaaattta 32051427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 21727453 - 21727499
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatt 273  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||    
T  21727453 attggaaattgtaatagttgactttttaaaagaataattactaaatt 21727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 43224071 - 43224197
Alignment:
Q  173 tccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaaagataa 263  Q
    ||||| ||| |||||||||||||||||||| ||| |||||||| ||||||         || ||||| ||||||||| ||||||||||||||||  ||||    
T  43224071 tccggggcattctttaagcactttaaatagcaagtttttaatgaaaagttgtgtattacatacattggaaattgtaacagttgactttttaaaagaataa 43224170  T
Q  264 ttactaaatttaggatgtttaaggagt 290  Q
    |  |||| ||||||||| |||| ||||    
T  43224171 tatctaattttaggatgcttaaagagt 43224197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 25886229 - 25886140
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    |||| |||||||||||||||||||| ||| |  |||||| |||||||||  |||||||| ||||||||    |||||| |||||||||||    
T  25886229 attgaaaattgtaatagttgactttctaagagaataatttctaaatttaaaatgtttaaagagtaccccgaggacactagttaacaaaac 25886140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 35731428 - 35731376
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaag 206  Q
    |||||||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  35731428 gggaaatgttaacgagtgcccccgg-gcactctttaagcactttaattagtaag 35731376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 3692939 - 3692879
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgttta 284  Q
    ||||||| |||||||||||||||| |||||||||  |||||| |||||||| | |||||||    
T  3692939 tgcattggaaattgtaatagttgattttttaaaagaataattgctaaatttggtatgttta 3692879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 44592926 - 44592839
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||| |||||||||||||| |||||||||||  ||||||| ||||||| | || ||||| ||||   | ||| ||||||||||||||    
T  44592926 cattgaaaattgtaatagttaactttttaaaagaataattattaaattttgaatatttaaagagtgttccagaaacactcgttaacaa 44592839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 26239505 - 26239567
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatg 215  Q
    ||||||||||||| ||||| ||  | | ||||||||| |||||||||||||||| ||||||||    
T  26239505 gggaaatgttaacaagtgcttctagggtactctttaaacactttaaatagtaagtttttaatg 26239567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 40754002 - 40754056
Alignment:
Q  236 tgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||||||| ||||| |||| ||||||| |||||||| ||||||||| ||||    
T  40754002 tgtaatagttgatttttttaaaaaataattattaaatttatgatgtttaaagagt 40754056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 21727370 - 21727431
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaat 214  Q
    ||||||||||||||||||| |  || ||||||||||||||||| ||||  |||| |||||||    
T  21727370 gggaaatgttaacgagtgcctttggggcactctttaagcacttcaaatgataagtttttaat 21727431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 31902718 - 31902766
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaa 205  Q
    ||||||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  31902718 aaatgttaacgagtgcccccg-agcactctttaaggactttaaatagtaa 31902766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 35731349 - 35731316
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaa 257  Q
    ||||||| ||||||||||||||||||||||||||    
T  35731349 tgcattggaaattgtaatagttgactttttaaaa 35731316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 3693018 - 3692962
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggtttt 211  Q
    ||||||||||||||||  ||||| |||||||||||| | ||||| ||||||| ||||    
T  3693018 gaaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagttttt 3692962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 39321028 - 39321076
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaattt 274  Q
    ||||| ||||||||||||||||||||||||||  ||||||  |||||||    
T  39321028 cattgaaaattgtaatagttgactttttaaaagaataattgttaaattt 39321076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 47754472 - 47754524
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaa 205  Q
    |||||||||||||||||||  | || ||||||||||||  |||||||||||||    
T  47754472 gggaaatgttaacgagtgcccctggggcactctttaagacctttaaatagtaa 47754524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 153 - 313
Target Start/End: Complemental strand, 2864283 - 2864116
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||         |||||||| ||||||||||||    
T  2864283 gggaaatgttaacgagtgcc-ccggagcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatag 2864185  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||||||||||| | |||||| |||||| | |||||||||| ||||  ||  | |||||||||||||||    
T  2864184 ttgactttttaaaga-ataattcctaaatatgggatgtttaaagagtgtcccggggacactcgttaacaa 2864116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 179 - 313
Target Start/End: Complemental strand, 39150698 - 39150555
Alignment:
Q  179 gcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatagttgactttttaaaaagataattacta 269  Q
    |||||||||||||||||||| ||||||| |||||||| ||| |||||         ||||||||||||||||||||||||||||| ||  ||||||||||    
T  39150698 gcactctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattacta 39150599  T
Q  270 aatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||||||||| |||| |||| |||  | | |||||||||||||    
T  39150598 aatttaggatgcttaaagagtgccccgggggcactcgttaacaa 39150555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 153 - 316
Target Start/End: Original strand, 43396979 - 43397153
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||   ||| |||||| |||| |||||||||||||||| |||||||| ||||||         |||||||| ||||| ||||||    
T  43396979 gggaaatgttaacgagtgccctcggcgcactcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataatag 43397078  T
Q  244 ttgactttttaaaa--agataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    ||||||||||||||  | ||||||||||||||||||||| |||| |||| ||   ||  ||||||||||||||||    
T  43397079 ttgactttttaaaaatatataattactaaatttaggatgcttaaagagtgcctcggaatcactcgttaacaaaac 43397153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 8373098 - 8372991
Alignment:
Q  183 tctttaagcactttaaatagtaaggttttaatggaaagttatgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtt 282  Q
    ||||||| ||| |||||||||||| ||||| || ||| | ||| |||| | |||||||||||||| |||||||||  ||||||| |||||||||||||||    
T  8373098 tctttaaacacgttaaatagtaagtttttattgaaaaatgatgtattgaagattgtaatagttgattttttaaaagaataattattaaatttaggatgtt 8372999  T
Q  283 taaggagt 290  Q
    ||| ||||    
T  8372998 taaagagt 8372991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 8794478 - 8794411
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagta 291  Q
    ||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||||| |||| |||||    
T  8794478 tgcattgaaaattataatagttgactttttaaaagaataattactaaatttaggatgcttaaagagta 8794411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 38491284 - 38491228
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||    
T  38491284 atgcattgtaaattgtaatagttgactttttaacataataattactaaatttgggat 38491228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 8365566 - 8365499
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||| | |||||||||||||| |||||||||  ||||||| |||||||||||||||||| ||||    
T  8365566 atgcattgaagattgtaatagttgattttttaaaagaataattattaaatttaggatgtttaaagagt 8365499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 3982406 - 3982277
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||||||||  ||||| ||||||||||| |||||||||||||||  |||| ||  ||||||         ||||||| |||||| ||||||    
T  3982406 gggaaatgttaacgagtgtctccggtgcactctttaaacactttaaatagtaa-atttttattaaaagttgtctattcaatgcattataaattataatag 3982308  T
Q  244 ttgactttttaaaaagataattactaaattt 274  Q
    ||||||||||  ||| |||||||||||||||    
T  3982307 ttgactttttctaaaaataattactaaattt 3982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 48022396 - 48022486
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    |||||||| |||||| ||||||| |||||||||||  ||||||||||||| | ||||| |||| |||||||  || | |||||||||||||    
T  48022396 atgcattgaaaattgcaatagttaactttttaaaacaataattactaaatatgggatgcttaaagagtaccacaggggcactcgttaacaa 48022486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 7212883 - 7212785
Alignment:
Q  180 cactctttaagcactttaaatagtaaggttttaatggaaagtt----atgcattgtaaattgtaatagttgactttttaaaaagataattactaaattt 274  Q
    |||||||||| |||||||||| ||||| ||| |||  ||||||    |||||||| |||||||||| ||| |||||||||||  |||||||||||||||    
T  7212883 cactctttaaacactttaaattgtaagttttaaataaaaagttgtgaatgcattggaaattgtaattgttaactttttaaaagtataattactaaattt 7212785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 34232752 - 34232817
Alignment:
Q  225 gcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||| ||||||||||||||||||||||||||  |||||| ||||||| |||||| |||| ||||    
T  34232752 gcattgaaaattgtaatagttgactttttaaaagaataattgctaaattaaggatgcttaaagagt 34232817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 291
Target Start/End: Original strand, 38748686 - 38748832
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatag 243  Q
    |||||||||||||||||||  || | |||||||||||||||||||| ||||||| | || ||| |||||| ||         ||||| ||||| ||||||    
T  38748686 gggaaatgttaacgagtgcccccag-gcactctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataatag 38748784  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagta 291  Q
    ||||||||||||||  |||||| |||||||| | ||| |||| |||||    
T  38748785 ttgactttttaaaagaataatttctaaatttggtatgcttaaagagta 38748832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 39156324 - 39156273
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaattt 274  Q
    |||||||| |||||||| |||||||||||||||||  |||||||||||||||    
T  39156324 atgcattggaaattgtagtagttgactttttaaaagaataattactaaattt 39156273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 32562397 - 32562447
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaattt 274  Q
    ||||||| |||||||||||||||| |||||||||  |||||||||||||||    
T  32562397 tgcattgaaaattgtaatagttgaatttttaaaataataattactaaattt 32562447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 17552887 - 17552843
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaatttag 276  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||    
T  17552887 aaattataatagttgactttttaaaaaaataattattaaatttag 17552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 26811274 - 26811337
Alignment:
Q  222 tatgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    |||| |||| ||||| |||||||| | |||||||||  ||||||||||||| ||||||||||||    
T  26811274 tatgtattggaaattctaatagttaattttttaaaagaataattactaaatataggatgtttaa 26811337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 47187864 - 47187931
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||| ||||| |||||||||| ||||||||   ||||||||||||||| ||||| |||| ||||    
T  47187864 atgcattggaaattataatagttgattttttaaatgaataattactaaatttgggatgcttaaagagt 47187931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 34232675 - 34232725
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagt 203  Q
    |||||||||||||||||||   |||| |||||||||||||| |||||||||    
T  34232675 gggaaatgttaacgagtgccctcggaacactctttaagcaccttaaatagt 34232725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 36563767 - 36563673
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaa-agataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    |||||||| ||||| ||||||||||| |||| ||| | ||||||  |||| ||||||| |||||  ||| ||||||||||  |||||||||||||    
T  36563767 atgcattgaaaattataatagttgacgttttgaaagaaataattgttaaacttaggatctttaaatagtgccctagagacggtcgttaacaaaac 36563673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 39914576 - 39914682
Alignment:
Q  157 aatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagt-tat-----gcattgtaaattgtaatagttgactt 250  Q
    ||||||||||||||| | ||||| | | |||||||||||||| ||||| | |||| ||  ||||| |||     |||||| |||||||||||||||||||    
T  39914576 aatgttaacgagtgccttcggagtattatttaagcactttaattagtaggttttttattaaaagtgtattgagtgcattgaaaattgtaatagttgactt 39914675  T
Q  251 tttaaaa 257  Q
    |||||||    
T  39914676 tttaaaa 39914682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 34409874 - 34409813
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatg 215  Q
    |||||||||||||||||| || ||  || |||||| ||||||||||| ||||| ||||||||    
T  34409874 ggaaatgttaacgagtgcttctgggacattctttatgcactttaaatggtaagtttttaatg 34409813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 44329659 - 44329610
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaat 272  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||| |||||    
T  44329659 atgcattgaaaattataatagttgactttttaaaagaataattattaaat 44329610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 44829326 - 44829273
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    ||||||||||||||||| |||| |||  ||||||||||||||| ||||| ||||    
T  44829326 aaattgtaatagttgacctttttaaagaataattactaaatttgggatgcttaa 44829273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 2995018 - 2995070
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    |||| ||||| |||||||| |||||||||||  ||||||||||||||| ||||    
T  2995018 attgaaaattataatagtttactttttaaaataataattactaaattttggat 2995070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 326
Target Start/End: Original strand, 62491 - 62671
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatagtt 245  Q
    ||||||||||||||||  ||||| | |||||||||||||||||||||||||| |||||||  ||| |||||         ||||| |||| |||||||||    
T  62491 gaaatgttaacgagtgtctccggggtactctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagtt 62590  T
Q  246 gactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactcatgttttt 326  Q
    ||||||||||||  ||||||||||||| |  |||| |||| ||||||||| ||||||||||||||||| || ||| |||||    
T  62591 gactttttaaaagaataattactaaatatgagatgcttaaagagtaccctggagacactcgttaacaagacccatattttt 62671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 19890183 - 19890325
Alignment:
Q  183 tctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatt 273  Q
    ||||||||||||| ||||| |||| |||||||| ||||||         |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  19890183 tctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattactaaatt 19890282  T
Q  274 taggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    ||||||| ||||  |||||||  || |||||||||||||||||    
T  19890283 taggatgcttaaatagtaccccggaaacactcgttaacaaaac 19890325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 20064971 - 20064884
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| |||||||||  |||| |||| |||||||| |||||||||||||    
T  20064971 cattgaaaattgtaatagttgactttttaaaagaataattactatatttaggatccttaaagagtgccctagaggcactcgttaacaa 20064884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 313
Target Start/End: Original strand, 1334851 - 1335017
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttg 246  Q
    |||||||||||| ||   |||||||||||||||||||||||||||  |||| |||||||| ||| ||         |||||||| |||||||||||||||    
T  1334851 aaatgttaacgattgtccccggagcactctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttg 1334950  T
Q  247 actttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    | ||||| |||  ||||||| ||||||| ||||| |||| |||| |||  |||| ||||||||||||    
T  1334951 atttttttaaagaataattattaaatttgggatgcttaaagagtgccccggagatactcgttaacaa 1335017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 31452313 - 31452451
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagtt 245  Q
    ||||||||||||||||   ||||| || | |||||||||||||||||||||| |||||||  ||||||         |||||||| |||||||||| |||    
T  31452313 gaaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagtttttaata-aaagttgtgtattgaatgcattgaaaattgtaattgtt 31452411  T
Q  246 gactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    ||||||||||||  |||||||||||| || ||||||||||    
T  31452412 gactttttaaaagaataattactaaacttgggatgtttaa 31452451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 34904755 - 34904880
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttg 246  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||| | |||||| ||| ||         || ||||  |||||||||||||||    
T  34904755 aaatgtcaacgagtgcttccggagcactctttaagcactttaaattgtaagttattaatgaaaaattttgtattaaattcattaaaaattgtaatagttg 34904854  T
Q  247 actttttaaaaagataattactaaat 272  Q
    | |||||||||  |||||||||||||    
T  34904855 attttttaaaagaataattactaaat 34904880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 41933270 - 41933143
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttat---------gcattgtaaattgtaatagttg 246  Q
    |||| ||||||||||   ||||||||||||||||||||||||| ||||||  |||| ||  |||||| |         |||||| |||||||||||||||    
T  41933270 aaatattaacgagtgttcccggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattgaaaattgtaatagttg 41933171  T
Q  247 actttttaaaaagataattactaaattt 274  Q
    |||||||||||  |||||| ||||||||    
T  41933170 actttttaaaagaataattgctaaattt 41933143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 4762412 - 4762350
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    |||||||| ||||| |||||||||||||| |||||  ||||||||||||||| ||||| ||||    
T  4762412 atgcattgaaaattataatagttgactttataaaataataattactaaatttgggatgcttaa 4762350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 9173754 - 9173803
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttag 276  Q
    |||| |||||||||||||||| |||||||||| |||||| ||||||||||    
T  9173754 attgaaaattgtaatagttgattttttaaaaaaataattgctaaatttag 9173803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 29239292 - 29239336
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattact 268  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||    
T  29239292 atgcattgaaaattgtaatagttgactttttaaaaa-ataattact 29239336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 11944916 - 11944972
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    |||||||| ||||||||||||||||| ||||  ||| |||||||||||| |||||||    
T  11944916 atgcattgaaaattgtaatagttgacattttttaaaaataattactaaaattaggat 11944972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 14295691 - 14295635
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    |||||||| |||||||||||||| || ||||||||  ||||||||||||||| ||||    
T  14295691 atgcattgaaaattgtaatagttaaccttttaaaagaataattactaaatttgggat 14295635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 31017275 - 31017407
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttg 246  Q
    |||||||||||||||| | ||| ||| ||||||||||||||||||   ||| |||||||| ||||||         |||||||| |||||  |||| |||    
T  31017275 aaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaattaaaatatttg 31017374  T
Q  247 actttttaaaaagataattactaaatttaggat 279  Q
    ||||||| |||  ||||||||||||||| ||||    
T  31017375 acttttttaaagaataattactaaatttgggat 31017407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 37993141 - 37993046
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactc 318  Q
    |||||||| |||||||||||||||| ||||| |||  ||| ||| ||||||||| |||||||| || |  ||   ||||||||||||||| |||||    
T  37993141 atgcattgaaaattgtaatagttgattttttgaaagaatagttattaaatttagaatgtttaaagaatgtcccgaagacactcgttaacagaactc 37993046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 27133117 - 27133044
Alignment:
Q  245 tgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactc 318  Q
    ||||||||| |||  |||||| || | ||||| |||||||| |||||| || |||||||||||| |||||||||    
T  27133117 tgacttttttaaagaataattgcttattttagtatgtttaaagagtactctggagacactcgttgacaaaactc 27133044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 2393005 - 2393057
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaa 205  Q
    |||||| |||||||||||| ||||| ||||||||||||  ||||| |||||||    
T  2393005 gggaaaggttaacgagtgcctccggggcactctttaagacctttatatagtaa 2393057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 7673253 - 7673201
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    |||| ||||||||||||||||||||| || |  |||||| |||||||||||||    
T  7673253 attgaaaattgtaatagttgacttttaaagagaataattgctaaatttaggat 7673201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 35443460 - 35443516
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggtttta 212  Q
    |||||||||||||||| || ||| ||||||||||| ||||| ||| ||||| |||||    
T  35443460 aaatgttaacgagtgcctctggaacactctttaagtacttttaatcgtaagttttta 35443516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 42967099 - 42967047
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaa 205  Q
    |||||||||||||  |||| ||||| ||||||||||||  |||||||||||||    
T  42967099 gggaaatgttaaccggtgcatccggggcactctttaagacctttaaatagtaa 42967047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 18229566 - 18229714
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||| ||||| |||||||| ||| ||         ||| |||| ||||||||||||    
T  18229566 gggaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaatag 18229665  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagtac 292  Q
    || |||||||||||  ||||||||||||||| ||||| |||| ||||||    
T  18229666 ttaactttttaaaagaataattactaaatttgggatgcttaaagagtac 18229714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 30104946 - 30104800
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||| |||||  |||||||||||||||| |||||||| | ||||| |||||||| ||||||         |||||||| |||||||||| |    
T  30104946 gggaaatgttaactagtgcccccggagcactctttaaacactttaagtggtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaattg 30104847  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    ||||||||||||||| ||| ||||||||||| ||||| |||| ||||    
T  30104846 ttgactttttaaaaaaatagttactaaatttgggatgcttaaagagt 30104800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 9276573 - 9276712
Alignment:
Q  182 ctctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatagttgactttttaaaaagataattactaaat 272  Q
    ||||||||||||||||||||||||| |||||||| |||||||||         ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaat 9276672  T
Q  273 ttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    || ||||| || | || ||||| | ||||||||||||||||    
T  9276673 ttgggatgcttgaagaatacccga-agacactcgttaacaa 9276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 313
Target Start/End: Original strand, 30501103 - 30501273
Alignment:
Q  153 gggaaatgttaacgagtgcgtcc-ggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaata 242  Q
    |||||||||||||||||||  || || |||||  ||||||||||||||||||||| ||| |||| ||||||         ||| |||| |||||||||||    
T  30501103 gggaaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaata 30501202  T
Q  243 gttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
     ||||||||||||||  ||||||||||||||| ||||| |||| |||| |||| | | |||||||||||||    
T  30501203 attgactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaa 30501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 313
Target Start/End: Original strand, 30541446 - 30541616
Alignment:
Q  153 gggaaatgttaacgagtgcgtcc-ggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaata 242  Q
    |||||||||||||||||||  || || |||||  ||||||||||||||||||||| ||| |||| ||||||         ||| |||| |||||||||||    
T  30541446 gggaaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaata 30541545  T
Q  243 gttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
     ||||||||||||||  ||||||||||||||| ||||| |||| |||| |||| | | |||||||||||||    
T  30541546 attgactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaa 30541616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 3140873 - 3140776
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactcatgttt 324  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||||| ||||||||| || |  || | | ||||||||||||||||||| |||||    
T  3140873 attgaaaattgtaatagttgactttttaaaagaataattattaaatttatgatgtttaaagaatgtcccaaatacactcgttaacaaaactcttgttt 3140776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 17692403 - 17692263
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatag 243  Q
    |||||||||||||||||||  |||| | ||||||||||||||| |||||||| | |||||||| |||||| ||         ||||| ||||||||| ||    
T  17692403 gggaaatgttaacgagtgcccccgg-gtactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacag 17692305  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    |||||||||||| |  ||||||||||||||||||||| ||||    
T  17692304 ttgactttttaagagaataattactaaatttaggatgcttaa 17692263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 16667257 - 16667386
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagt 244  Q
    |||||||||||||||||  ||| || |||| |||||||||||||||||||||| |||||||| ||| ||         ||| |||| ||||||||||| |    
T  16667257 ggaaatgttaacgagtgtctccagaacactttttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataat 16667356  T
Q  245 tgactttttaaaaagataattactaaattt 274  Q
    |||||||||||||  ||||||| |||||||    
T  16667357 tgactttttaaaagaataattattaaattt 16667386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 316
Target Start/End: Original strand, 34899101 - 34899270
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    |||||||||||||||||||  | || ||||||||||| |||||||||||||||| ||| |||| ||||||         |||||||  |||||||||||     
T  34899101 gggaaatgttaacgagtgcaccagg-gcactctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaataa 34899199  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    ||| ||||||||||  |||||||||| |||| ||||| |||| ||||  |   ||||||||||||||||||||    
T  34899200 ttgtctttttaaaagaataattactatatttgggatgcttaaagagtgtc--tgagacactcgttaacaaaac 34899270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 282
Target Start/End: Complemental strand, 8221261 - 8221126
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttg 246  Q
    ||||||||| |||||  ||||||||| |||||||||| ||||||||||||| |||||||  ||| ||         |||||||| || ||||||||||||    
T  8221261 aaatgttaatgagtgtctccggagcattctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatagttg 8221162  T
Q  247 actttttaaaaagataattactaaatttaggatgtt 282  Q
    ||||||||| |  |||||| |||||||||| |||||    
T  8221161 actttttaagagaataattgctaaatttagaatgtt 8221126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 2918640 - 2918733
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaac 316  Q
    |||||||| ||||| ||||||||||| |||| |||| ||||||| |||||||   ||| |||| |||||||| | || ||||||||||||||||    
T  2918640 atgcattggaaattataatagttgacatttttaaaaaataattattaaatttgaaatgcttaaagagtaccccaaaggcactcgttaacaaaac 2918733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 7968512 - 7968463
Alignment:
Q  173 tccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt 222  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  7968512 tccggggcactctttaagcactttaaatagtaagtttttaatgaaaagtt 7968463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 39558731 - 39558799
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagt 221  Q
    ||||||||||||||||||  | |||||||||  ||||||| ||||||||||||| ||||| || |||||    
T  39558731 gggaaatgttaacgagtgtcttcggagcacttcttaagcattttaaatagtaagtttttattgaaaagt 39558799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 8208318 - 8208249
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg 225  Q
    |||||||||||||||| ||||||| ||||||||| ||| ||||||  |||| |||  ||| |||||||||    
T  8208318 aaatgttaacgagtgcttccggagtactctttaaacacattaaatgataagttttatatgaaaagttatg 8208249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 5815038 - 5815102
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaag 220  Q
    |||||||||||||||| |  || ||||||||||||||||| ||  |||||| |||||||| ||||    
T  5815038 aaatgttaacgagtgcttttggggcactctttaagcacttaaagcagtaagtttttaatgaaaag 5815102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 14166773 - 14166725
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaata 201  Q
    ||||||||||||| ||||| ||||||| ||||||||||  |||||||||    
T  14166773 gggaaatgttaacaagtgcttccggagtactctttaagacctttaaata 14166725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 15720127 - 15720079
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaattt 274  Q
    ||||| ||||||||||||||||||||||||||  ||||||  |||||||    
T  15720127 cattggaaattgtaatagttgactttttaaaagaataattgataaattt 15720079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 23117191 - 23117263
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg 225  Q
    ||||||| ||||| ||||  || |||||| ||||||| || ||||||||||||| |||||||| ||| |||||    
T  23117191 gggaaatattaactagtgtctctggagcattctttaatcattttaaatagtaagtttttaatgaaaaattatg 23117263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 17215650 - 17215777
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttg 246  Q
    |||||||||||||||| | |||| ||||||||||||||||||||| ||||| |||||||  ||| ||         |||||||| |||||||||||||||    
T  17215650 aaatgttaacgagtgccttcggatcactctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaatagttg 17215749  T
Q  247 actttttaaaaagataattactaaattt 274  Q
    |||||||||||| |||||||||||||||    
T  17215750 actttttaaaaaaataattactaaattt 17215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 32823819 - 32823697
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  ||| |||||||| ||||||         |||||||| |||||||||||     
T  32823819 gggaaatgttaacgagtgcctccggagcactctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaataa 32823720  T
Q  244 ttgactttttaaaaagataatta 266  Q
    ||||||||| ||||  |||||||    
T  32823719 ttgacttttcaaaagaataatta 32823697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 11720889 - 11721011
Alignment:
Q  191 cactttaaatagtaaggttttaatggaaagttatgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||| ||||||  |||  ||| |||||| || |||| ||||||||||||||||||| ||||||  ||||||  |||||||||||||||||| ||||    
T  11720889 cactttaattagtaaattttgtatgaaaagttgtgtattgaaaattgtaatagttgacttcttaaaagaataattgttaaatttaggatgtttaaagagt 11720988  T
Q  291 accctagagacactcgttaacaa 313  Q
      |  | ||||||||||||||||    
T  11720989 gactcaaagacactcgttaacaa 11721011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 7421787 - 7421684
Alignment:
Q  180 cactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaaagataattactaa 270  Q
    |||||||||||||||||||||||||| |||||| |  ||||||         |||||||| ||||||||||| ||||||||||||| | |||||||||||    
T  7421787 cactctttaagcactttaaatagtaaagttttattaaaaagttgtgtattaaatgcattgaaaattgtaatatttgactttttaaataaataattactaa 7421688  T
Q  271 attt 274  Q
    ||||    
T  7421687 attt 7421684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 2692476 - 2692529
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  2692476 cattggaaattgtaatagttgactttttaaaataataattactaaattttggat 2692529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 31855168 - 31855083
Alignment:
Q  181 actctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagttgactttttaaaa 257  Q
    |||||||||||||||||||||||||| |||||||| ||| ||         |||||||| ||||||||||||||||||||||||||    
T  31855168 actctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgactttttaaaa 31855083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 27778818 - 27778761
Alignment:
Q  223 atgcattgtaaattgtaatagttgacttttta-aaaagataattactaaatttaggat 279  Q
    |||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||    
T  27778818 atgcattgaaaattataatcgttgactttttaaaaaaaataattactaaatttaggat 27778761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 1841046 - 1840994
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaattta 275  Q
    |||||||| |||||||||||||||| |||||||||  ||||||| ||||||||    
T  1841046 atgcattggaaattgtaatagttgattttttaaaagaataattattaaattta 1840994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 19293505 - 19293563
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||||||||||||| |||||||||||  ||||||  ||||||||||||| |||| ||||    
T  19293505 aaattgtaatagttaactttttaaaataataattgttaaatttaggatgcttaaagagt 19293563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 30739662 - 30739568
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaact 317  Q
    |||||||| |||| |||  |||| ||||||||| |  ||||||||||||||||| ||  |||| |||| |||   ||||||||||||||||||||    
T  30739662 atgcattggaaatcgtaccagttaactttttaatagaataattactaaatttagaatacttaaagagtgccccgaagacactcgttaacaaaact 30739568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 23399250 - 23399121
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatg---------cattgtaaattgtaatagtt 245  Q
    ||||||||||||||||  |||| | ||||||||||| |||||||||| |||| |||  ||  |||||||||         ||||| ||||| ||||||||    
T  23399250 gaaatgttaacgagtgtctccgaaacactctttaagtactttaaatattaagttttatattaaaagttatgcaacgaatacattgaaaattataatagtt 23399151  T
Q  246 gactttttaaaaagataattactaaattta 275  Q
     |||||||||||  |||||| |||||||||    
T  23399150 aactttttaaaagaataatttctaaattta 23399121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 18737903 - 18737852
Alignment:
Q  154 ggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaag 206  Q
    |||||||||||||||| |  |||||||||||||||| |||||||||| |||||    
T  18737903 ggaaatgttaacgagtaca-ccggagcactctttaaacactttaaattgtaag 18737852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 26669331 - 26669371
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaat 272  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  26669331 aaattgtaatagttgactttttaaaagaataattattaaat 26669371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 318
Target Start/End: Original strand, 48180135 - 48180309
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatag 243  Q
    ||||||||||||||| |   |||||| |||||||| | |||||||||||||||| |||| ||| || |||         |||||||| ||||||||||||    
T  48180135 gggaaatgttaacgaatatctccggaacactcttttatcactttaaatagtaagttttttatgaaatgttgggtaaccaatgcattggaaattgtaatag 48180234  T
Q  244 ttgactttttaaaaagataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaaaactc 318  Q
    ||||||||||||||  ||||||  ||||||  ||||| |||| ||||  ||  ||||||||||||||||| ||||    
T  48180235 ttgactttttaaaagaataattgttaaattggggatgcttaaagagtgtcccggagacactcgttaacaagactc 48180309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 29083865 - 29084005
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaa-tagtaaggttttaatggaaagtt---------atgcattgtaaattgtaatagt 244  Q
    ||||||||||||||||| ||| |   ||||||||||||||||||| ||||||| ||||| || ||||||         |||||||  |||||||||||||    
T  29083865 gaaatgttaacgagtgcctccaggatactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagt 29083964  T
Q  245 tgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    | |||||||||||  ||||||||||| ||||||||| ||||    
T  29083965 taactttttaaaagaataattactaagtttaggatgattaa 29084005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 42846053 - 42846116
Alignment:
Q  227 attgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagt 290  Q
    |||| |||||| ||||||||||||||| |||  ||||||||||||||||||||| |||| ||||    
T  42846053 attgaaaattgaaatagttgactttttcaaagaataattactaaatttaggatgcttaaagagt 42846116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 46093528 - 46093646
Alignment:
Q  156 aaatgttaacgagtgcgtccggagcactctttaagcactttaaatagtaaggttttaatggaaagttatgcattgtaaattgtaatagttgactttttaa 255  Q
    |||||||||||||||| ||||| | |||||||||| |||||||||||||| |||||  ||  |  | ||||||   |||||||||||||| ||||||| |    
T  46093528 aaatgttaacgagtgcctccggggtactctttaagaactttaaatagtaa-gttttgttgtgatttaatgcataaaaaattgtaatagttaactttttta 46093626  T
Q  256 aaagataattactaaattta 275  Q
    ||  |||||| |||||||||    
T  46093627 aagaataattgctaaattta 46093646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 49362400 - 49362459
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    ||||| |||||||||||||| |||||||||||  ||||||| ||||||| ||||||||||    
T  49362400 cattggaaattgtaatagttaactttttaaaagaataattattaaatttgggatgtttaa 49362459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 52638202 - 52638257
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||||| ||||||||||||||| ||||||||||  ||||||||||||||| ||||    
T  52638202 tgcattggaaattgtaatagttggctttttaaaataataattactaaattttggat 52638257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 39400242 - 39400279
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaag 190  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  39400242 gggaaatgttaacgagtgcttccggagcactctttaag 39400279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 24791638 - 24791498
Alignment:
Q  155 gaaatgttaacgagtgcgtccggagcactctttaagcactttaaatag---taaggttttaatggaaagttatg---------cattgtaaattgtaata 242  Q
    ||||||||||||||||| ||| || ||||||||||  |||||||||||   |||| |||||||| |||||||||         ||||| |||||||||||    
T  24791638 gaaatgttaacgagtgcctccaga-cactctttaaatactttaaatagtactaagtttttaatgaaaagttatgtattgaatacattgaaaattgtaata 24791540  T
Q  243 gttgactttttaaaaagataattactaaatttaggatgtttaa 285  Q
    |||||||||||||| | ||||  |||||||||| |||| ||||    
T  24791539 gttgactttttaaaga-ataacgactaaatttatgatgcttaa 24791498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 16663039 - 16662992
Alignment:
Q  224 tgcattgtaaattgtaatagttgactttttaaaaagataattactaaa 271  Q
    |||||||  |||||||||||||||||||||||||  ||||||||||||    
T  16663039 tgcattggtaattgtaatagttgactttttaaaataataattactaaa 16662992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 22730529 - 22730575
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattacta 269  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||||    
T  22730529 atgcattgaaaattataatagttgactttttaaaagaataattacta 22730575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 3027117 - 3027084
Alignment:
Q  159 tgttaacgagtgcgtccggagcactctttaagca 192  Q
    ||||||||||||| ||||||||||||||||||||    
T  3027117 tgttaacgagtgcctccggagcactctttaagca 3027084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 26900066 - 26900103
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaaga 260  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  26900066 atgcattgaaaattgtaatagttgacttttttaaaaga 26900103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 31625305 - 31625342
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaag 190  Q
    |||||||||||||||||||  |||||||||||||||||    
T  31625305 gggaaatgttaacgagtgctcccggagcactctttaag 31625342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 50604079 - 50604026
Alignment:
Q  260 ataattactaaatttaggatgtttaaggagtaccctagagacactcgttaacaa 313  Q
    ||||||||| ||||||| ||| |||| |||| |||| |||||||||||||||||    
T  50604079 ataattacttaatttagaatggttaaagagtgccctggagacactcgttaacaa 50604026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 17517695 - 17517655
Alignment:
Q  153 gggaaatgttaacgagtgcgtccggagcactctttaagcac 193  Q
    ||||||||||||||||||| ||||| |||||| ||||||||    
T  17517695 gggaaatgttaacgagtgcctccggggcactcattaagcac 17517655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 25141 - 25073
Alignment:
Q  223 atgcattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggatgtttaaggagta 291  Q
    |||||||| |||||||||||||||| |||||||| | ||||||  |||||| ||||||||||| |||||    
T  25141 atgcattgaaaattgtaatagttgattttttaaagaaataattgttaaattaaggatgtttaaagagta 25073  T

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Target: scaffold1444 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 978 - 1031
Alignment:
Q  226 cattgtaaattgtaatagttgactttttaaaaagataattactaaatttaggat 279  Q
    ||||| ||||||||||||||||||||||||||  | |||| |||||||||||||    
T  978 cattgaaaattgtaatagttgactttttaaaagaacaattgctaaatttaggat 1031  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 1462 - 1422
Alignment:
Q  232 aaattgtaatagttgactttttaaaaagataattactaaat 272  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  1462 aaattgtaatagttgactttttaaaagaataattattaaat 1422  T

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