View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14181_high_6 (Length: 442)

Name: NF14181_high_6
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14181_high_6
NF14181_high_6
[»] chr3 (3 HSPs)
chr3 (258-426)||(24479442-24479610)
chr3 (4-179)||(24479196-24479369)
chr3 (310-401)||(24461088-24461181)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 258 - 426
Target Start/End: Original strand, 24479442 - 24479610
Alignment:
Q  258 atgggatgaaaatatgacttgggtttttggttgcattgcaattgacttttacactatgatgaagccgccattagattcaagggtaattgcttccaactat 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24479442 atgggatgaaaatatgacttgggtttttggttgcattgcaattgacttttacactatgatgaagccgccattagattcaagggtaattgcttccaactat 24479541  T
Q  358 tttaacactctccattagcaaggtgaagcaaaatataatctcatttcattaccacattagtattagttg 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24479542 tttaacactctccattagcaaggtgaagcaaaatataatctcatttcattaccacattagtattagttg 24479610  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 24479196 - 24479369
Alignment:
Q  4 tcgagtgagatgaagaagaataaggttttggtagttatagaactgtgaatgtgaatttatataaagannnnnnnnnnnnnnaggtgcgaggattgaagat 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||    
T  24479196 tcgagagaaatgaagaagaataaggttttggtagttatagaactgtgaatgtgaatttatataaagagtgtgtgtgtgt--aggtgcgaggattgaagat 24479293  T
Q  104 ttagagttagaggtactttctgaacaagaaaggtaaattcattgagttgaagagagaggtgaagtgtgaaactgaa 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  24479294 ttagagtcagaggtactttctgaacaagaaaggtaaattcattgagttgaagagaaaggagaagtgtgaaactgaa 24479369  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 24461088 - 24461181
Alignment:
Q  310 actatgatgaagccgccattagattca--agggtaattgcttccaactattttaacactctccattagcaaggtgaagcaaaatataatctcat 401  Q
    |||||||||| |||| |||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||    
T  24461088 actatgatgaggccgtcattagattcacaaggttaattgcttccaaccattttaacactctccattagcaaggtgatgtaaaatctaatctcat 24461181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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