View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_1 (Length: 643)
Name: NF14181_low_1
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_1 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 47545065 - 47544467
Alignment:
| Q |
1 |
cctaaatcctttactgaatttaacgannnnnnnctctattgtgctttacggcaacagtctacagttgcagcgatgaatgaaagatttggacgagggattc |
100 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47545065 |
cctaaatcctttactgcatttaacgatttttttctctattgtgctttacggcaacaggctacagttgcagcgatgaatgaaagatttggacgagagattc |
47544966 |
T |
|
| Q |
101 |
ttgtttttgaaacatcatcactttctccatcacaaacttctacaacaaacaaaggtaatagcaagttagctttgacggtttttaagccctccgataaacg |
200 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544965 |
atgtttttgaaacatcttcactttctccatcacaaaattctacaacaaacaaaggtaatagcaagttagctttgacggtttttaagccctccgataaacg |
47544866 |
T |
|
| Q |
201 |
agcatttataatttcaagtttgtagatataatctttctaatggatctttcttgattatgtttatatgtgttgttggtatttatttcgaaagaagacgaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544865 |
agcatttataatttcaagtttgtagatataatctttctaatgtatctttcttgattatgtttatatgtgttgttggtatttatttcgaaagaagacgaga |
47544766 |
T |
|
| Q |
301 |
ccgatgagttctatgagttgactgataatgattattataaactcttgtctactaaaaaggaaggtaaagttgatcctcatccttgtatttgatgaataga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47544765 |
ccgatgagttctatgagttgactgataatgattattacaaactcttgtctactaaaaaggaaggtaaaattgatcctcatccttgtatttgatgaataga |
47544666 |
T |
|
| Q |
401 |
tgactctatagtttagatatagttgttgtcaagggatgtgtcctttaaatatccccttcatgacattgttatttaa---atgcattatatgtatagataa |
497 |
Q |
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| T |
47544665 |
tgactctatagtttagatatagttgttgtcaagggatgtgtcctttaaatatccccttcatgacattgttatttaaatgatgcattatatgtatagataa |
47544566 |
T |
|
| Q |
498 |
agctttgaagactcgaaatcttagagaagcagaagtggcagcttgcaggccaaggataaccaaggtaattagatttttctgacttatatatattgacaa |
596 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47544565 |
agttttgaagactcgaaatcttagagaagcagaagtcgcagcttgcaggccaaggataaccaaggtaattagatttttctgatttatatatattgacaa |
47544467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 233 - 518
Target Start/End: Complemental strand, 42700361 - 42700073
Alignment:
| Q |
233 |
ctttctaatggatctttcttgattatgtttatatgtgttgttggtatttatttcgaaagaagacgagaccgatgagttctatgagttgactgataatgat |
332 |
Q |
| |
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|||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| |
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| T |
42700361 |
ctttctgatgtatctttcctgattaagtttatatgtgttgttggtatttatttcgaaagaagacgagaccaatgagttctacgagttgactgataaagat |
42700262 |
T |
|
| Q |
333 |
tattataaactcttgtctactaaaaaggaaggtaaagttgatcctcatccttgtatttgatgaatagatgactct-------atagtttagatatagttg |
425 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |
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| T |
42700261 |
tattacaaactcttggctactaaaaaggaaggtaaaattgatcctcatccttgtatttgatgaataaatgactctatagacgatagtttagatatagtag |
42700162 |
T |
|
| Q |
426 |
ttgtcaagggatgtgtcctttaaatatccccttcatgacattgttatttaaatgcattatatgtatagataaagctttgaagactcgaaatct |
518 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
42700161 |
ttgtcaagggatgtgtcctttaaatatccccttcatggcattgttatttaa----attatatgtatagataaaattttgaagactcgaaatct |
42700073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 617
Target Start/End: Complemental strand, 42700072 - 42700012
Alignment:
| Q |
559 |
aaggtaattagatttttctgac--ttatatatattgacaatttttaaaataaacaaaatca |
617 |
Q |
| |
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| T |
42700072 |
aaggtaattagatttttctgaccattatatatattgacaatttttaaaataaacaaaatca |
42700012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 574
Target Start/End: Original strand, 109 - 231
Alignment:
| Q |
450 |
tatccccttcatgacattgttatttaaatgcattatatgtatagataaagctttgaagactcgaaatcttagagaagcagaagtggcagcttgcaggcca |
549 |
Q |
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|||||||||||||||||||||||||| ||| ||||| ||| |||||| ||||||||||||| ||| |||| ||||| |||||||| ||||| | |
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| T |
109 |
tatccccttcatgacattgttatttatatgtattat--gtacagataatttcctgaagactcgaaaacttcgagatgcagatctggcagctcgcaggtcc |
206 |
T |
|
| Q |
550 |
aggataaccaaggtaattagatttt |
574 |
Q |
| |
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| T |
207 |
agaataacaaaggtaattagatttt |
231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 574
Target Start/End: Complemental strand, 8019517 - 8019395
Alignment:
| Q |
450 |
tatccccttcatgacattgttatttaaatgcattatatgtatagataaagctttgaagactcgaaatcttagagaagcagaagtggcagcttgcaggcca |
549 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||| ||| |||||| ||||||||||||| ||| |||| ||||| |||||||| ||||| | |
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| T |
8019517 |
tatccccttcatgacattgttatttatatgtattat--gtacagataatttcctgaagactcgaaaacttcgagatgcagatctggcagctcgcaggtcc |
8019420 |
T |
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| Q |
550 |
aggataaccaaggtaattagatttt |
574 |
Q |
| |
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| T |
8019419 |
agaataacaaaggtaattagatttt |
8019395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 8019737 - 8019644
Alignment:
| Q |
289 |
aagaagacgagaccgatgagttctatgagttgactgataatgattattataaactcttgtctactaaaaaggaaggtaaagttgatcctcatcc |
382 |
Q |
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||||||| ||||| || |||||||||||||| |||| | | |||||||| ||| ||||| |||| ||||||||||||||| |||||||| |||| |
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| T |
8019737 |
aagaagaggagacagaagagttctatgagtttactgctgaagattattacaaaatcttggctacgaaaaaggaaggtaaaattgatcctaatcc |
8019644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 7966970 - 7967021
Alignment:
| Q |
517 |
cttagagaagcagaagtggcagcttgcaggccaaggataaccaaggtaatta |
568 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
7966970 |
cttagagaagcagaagtggcagctcgcaggtcaagaataaccaaggtaatta |
7967021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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