View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_10 (Length: 364)
Name: NF14181_low_10
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 60 - 345
Target Start/End: Original strand, 28406845 - 28407124
Alignment:
| Q |
60 |
ctagattatctaccttgttgaacacaggggtaataagggtgttcttgacggaaataaatcgcagcttcctcaagcaccttcttcacaaaggtggaatcgt |
159 |
Q |
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| T |
28406845 |
ctagattatctaccttg---aacacaggggtaataagggtgttcttgacggaattcaatcgcagcttcctcaagcaccttcttcacaaaggtggaatctt |
28406941 |
T |
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| Q |
160 |
caagtcgagaaatcaatttaaggatcaggcttgcatggttcacagatagaaaccaattaccaaaatatgtatcttcagcagcggaatcatcctcggattc |
259 |
Q |
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| T |
28406942 |
caagtcgagaaatcaatttaaggatcaggcttgcactgttcacagctagaaaccaattaccaaaatatgtatcttcagcagcgga---atccacggattc |
28407038 |
T |
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| Q |
260 |
agattcggaattctcatataagtcgagatcttcggttagggttgggtaaagaagttgacaaagcttgaccaattcatcaaggcgag |
345 |
Q |
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| T |
28407039 |
agattcggaattctcatataagtcgagatcttcggttagggttgggtaaagaagttgacaaagcttgaccaattcatcaaggcgag |
28407124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 28406784 - 28406823
Alignment:
| Q |
13 |
aagaaggatctacaccaacaaaagaagttataaaataaat |
52 |
Q |
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| T |
28406784 |
aagaaggatctacaccaacaaaagaagttataaaataaat |
28406823 |
T |
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