View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_12 (Length: 309)
Name: NF14181_low_12
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 772316 - 772582
Alignment:
| Q |
16 |
cagaatctccgccacaagatcgaatggaagagtgggcagtggtgccctatctctgccttggaatattctattcaaccatcttagcaacatagttgatttc |
115 |
Q |
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| T |
772316 |
cagaatctccgccacaagatcgaatggaagagtgggcagtggcgccctatctctgctttggaatattctattcaaccatcttagcaacatagttgatttc |
772415 |
T |
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| Q |
116 |
cgtcctgtgttgcgatttacaagaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgagtgtgtttgactttgcttaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
772416 |
cgtcctgtgttgcgatttacaagaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgagtgtttttgactttgcttaaaa |
772515 |
T |
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| Q |
216 |
tttgtttttattatatgtatcccttttctcgttttttatcctccgtaattcattgcgttttcgtgcaac |
284 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
772516 |
tttgtttttat--tatgtatcccttttctcgttttttttcctccgtaattcattgcgttttcgtgcaac |
772582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 2455107 - 2454842
Alignment:
| Q |
16 |
cagaatctccgccacaagatcgaatggaagagtgggcagtggtgccctatctctgccttggaatattctattcaaccatcttagcaacatagttgatttc |
115 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
2455107 |
cagaatttccgccacgagatcgaatggaagagtgggcagtggcgccctatctctgccttggagtattctattcaaccatcttggcaacgtagttgatttc |
2455008 |
T |
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| Q |
116 |
cgtcctgtgttgcgatttacaagaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgagtgtgtttgactttgcttaaaa |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2455007 |
cgtcctgtgttgcgatttacaacaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgagtgtgtttgactttgcttaaaa |
2454908 |
T |
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| Q |
216 |
tttgtttttattatatgtatcccttttctcgttttttatcctccgtaattcattgcgttttcgtgcaa |
283 |
Q |
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|| | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2454907 |
ttgttgtttat--tatgtatcccttttctcgttttttctcctccgtaattcattgcgttttcgtgcaa |
2454842 |
T |
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