View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_14 (Length: 259)
Name: NF14181_low_14
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 18345550 - 18345773
Alignment:
| Q |
19 |
cgttgaactatatattgtgactagcattttctcctgcagaataaagcaattcnnnnnnnnnn-tagaataatatgctcaactccataaagcataatttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18345550 |
cgttgaactatatattgtgactagcattttctcctgcagaataaagcaattcaaaaaaaaaaatagaataatatgctcaactccataaagcataatttct |
18345649 |
T |
|
| Q |
118 |
attataataaccctttaaatttaaaaatagaaatattatgaattacgattcgcgctttgtcttgtgaatagacacaaatattttttgaccaaaggcttat |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18345650 |
attataataacccttta------aaaatagaaatattatgaattacgattcgcgctttgtcttgtgaatagacacaaatattttttgaccaaaggcttat |
18345743 |
T |
|
| Q |
218 |
acttctatatattggttcttctttctccta |
247 |
Q |
| |
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|||||||| ||||||||||||||||||||| |
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| T |
18345744 |
acttctatgtattggttcttctttctccta |
18345773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 45010118 - 45009962
Alignment:
| Q |
21 |
ttgaactatatattgtgactagcattttctcctgcagaataaagcaattcnnnnnnnnnn--tagaataatatgctcaactccataaagcataatttcta |
118 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45010118 |
ttgaaataaatattgtgactagcattttctcctgcagaataaagcaattcaaaaaaaaaaaatagaataatatgctcaactccataaagcataatttcta |
45010019 |
T |
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| Q |
119 |
ttataataaccctttaaatttaaaaatagaaatattatgaattacgattcgcgcttt |
175 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||||||| |||| ||||||| |
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| T |
45010018 |
ttatcataaccctttaaatctaaaaatataaatattatgaattatgatttgcgcttt |
45009962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 13238943 - 13238719
Alignment:
| Q |
19 |
cgttgaactatatattgtgactagcattttctcctgcagaataaagcaattcnnnnnnnnnn--tagaataatatgctcaactccataaagcataatttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13238943 |
cgttgaactatatattgtgactagcattttctcctgcagaataaagcaattcaaaaaaaaaaaatagaataatatgctcaactccataaagcataatttc |
13238844 |
T |
|
| Q |
117 |
tattataataaccctttaaatttaaaaatagaaatattatgaattacgattcgcgctttgtcttgtgaatagacacaaatattttttgaccaaaggctta |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13238843 |
tattataataaccctttaaa------aatagaaatattatgaattacgattcgcgctttgtcttgtgaatagacacaaatattttttgaccaaaggctta |
13238750 |
T |
|
| Q |
217 |
tacttctatatattggttcttctttctccta |
247 |
Q |
| |
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||||||||| ||||||||||||||||||||| |
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|
| T |
13238749 |
tacttctatgtattggttcttctttctccta |
13238719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 14263850 - 14264011
Alignment:
| Q |
81 |
tagaataatatgctcaactccataaagcataatttctattataataaccctttaaatttaaaaatagaaatattatgaattacgattcgcgctttgtctt |
180 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||| |
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| T |
14263850 |
tagaataatatgctcaactccatagagcataatttctattatcataaccctttaaatttaataa-----atattatgaattacgattcacgctttgtctt |
14263944 |
T |
|
| Q |
181 |
gtgaatagacacaaatattttttgaccaaaggcttatacttctatatattggttcttctttctccta |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
14263945 |
gtgaatagacacaaatattttttgaccagaggcttatacttctatgtattggttcttctttctccta |
14264011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 14263802 - 14263834
Alignment:
| Q |
38 |
actagcattttctcctgcagaataaagcaattc |
70 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
14263802 |
actagcattttctcctgcagaataaagcaattc |
14263834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 44065964 - 44066121
Alignment:
| Q |
84 |
aataatatgctcaactccataaagcataatttctattataataaccctttaaatttaaaaatagaaatattatgaattacgattcgcgctttgtcttgtg |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||| |
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| T |
44065964 |
aataatatgctcaactccataaagcataatttctattatcaaaaccctttaaatttaaaaatataaatattatgaattactattcgcgttttttcttgtg |
44066063 |
T |
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| Q |
184 |
aatagacacaaatattttttgaccaaaggcttatacttctatatattggttcttcttt |
241 |
Q |
| |
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|||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
44066064 |
aatagagacacatattttttgactaaaggcttatacttctatgtattggttcttcttt |
44066121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 34476909 - 34476873
Alignment:
| Q |
110 |
taatttctattataataaccctttaaatttaaaaata |
146 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
34476909 |
taatttctattatcataaccctttaaatttaaaaata |
34476873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 14252967 - 14253017
Alignment:
| Q |
20 |
gttgaactatatattgtgactagcattttctcctgcagaataaagcaattc |
70 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14252967 |
gttgaactatatattgtgactagcattttctcctgaagaataaagcaattc |
14253017 |
T |
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