View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_17 (Length: 226)
Name: NF14181_low_17
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 28406561 - 28406749
Alignment:
| Q |
49 |
atcagtgcatggttacgtgaaaccaagcaatgcatgtctgcctagaacatgaatccaaatgcaattaaaggat-----------tataccttgagcttgc |
137 |
Q |
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| T |
28406561 |
atcagtgcatggttacatgaaaccaagcaatgcatgtctgcctagaacatgaacccaaatgcaattaaaggatctgacatggattataccttgagcttgc |
28406660 |
T |
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| Q |
138 |
gagcaaaataagcatccaatctactacaaatattctcgagagaatcacgttcgaatccaaaactaaccaatctagaagtaatcttctcg |
226 |
Q |
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| T |
28406661 |
gagcaaaataagcatccaatataaaactaatattctcgatagaatcacgttcgaatccaaaactaaccaatctagaagtaatcttctcg |
28406749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 28406515 - 28406543
Alignment:
| Q |
16 |
ataatgagttggttaaaacattaacatgc |
44 |
Q |
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| T |
28406515 |
ataatgagttggttaaaacattaacatgc |
28406543 |
T |
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