View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_4 (Length: 475)
Name: NF14181_low_4
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 83 - 467
Target Start/End: Original strand, 7435557 - 7435941
Alignment:
| Q |
83 |
taagtaaaaagatagagtagaaacataaaggataagttatgaaaaatagactaatttgattgattatgtgtcgaataaaatgtacaagtgtgatatttag |
182 |
Q |
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| T |
7435557 |
taagcaaaaagatagagtagaaacataaatgataagttatgaaaaatagactgatttgattgattatgtgtcgaataaaatgtacaagtgtgatatt-ag |
7435655 |
T |
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| Q |
183 |
ttatagacaaaattagtcctattgaccaatacattgtggcctaaagaatccaacattgttcggctattctcgcggtaacgtgtgcttcttcctgttgctg |
282 |
Q |
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| T |
7435656 |
ttatagacaaaattagtcctaatgaccaatacattgtggcctaaagaatccaacattgttcggctattctcacggtaacgtgtgcttcttcccgttgctg |
7435755 |
T |
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| Q |
283 |
ggattatgtgatgtcctacgtttgaccaatttgctcccagctcatggcattttcc--gnnnnnnnnngtccaccctgctaattgcctcaaaaccttcctc |
380 |
Q |
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| T |
7435756 |
ggattatgtgatgccctatgtttgaccaatttgctcccagctcatggcattttccatttttttttttgtccaccctgctaattgcctcaaaacgtgcctc |
7435855 |
T |
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| Q |
381 |
tgtgaagatagtcgtttcggttagtggcactataaatatggaacacgagcaaaatgatgaactgcaaaagttccatgtgcctttgct |
467 |
Q |
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| T |
7435856 |
tgtgaagatagtcgtttcggttagtagcactataaatatggaacacgagcaaaatgatgaactgc-caagttccatgtgcctttgct |
7435941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 7435449 - 7435518
Alignment:
| Q |
19 |
ttcctcaaccaaggaaagaactttgtctggcagttatgaattcgtcaactcttcaaaagagtggtaagta |
88 |
Q |
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| T |
7435449 |
ttcctcaaccaaggaaagaactttgtctggcagttatgaattcgtcaactcttcaaaagagtggtaagta |
7435518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 33736414 - 33736448
Alignment:
| Q |
137 |
tttgattgattatgtgtcgaataaaatgtacaagt |
171 |
Q |
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| T |
33736414 |
tttgattgattgtgtgtcgaataaaatgtacaagt |
33736448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 33908729 - 33908691
Alignment:
| Q |
133 |
ctaatttgattgattatgtgtcgaataaaatgtacaagt |
171 |
Q |
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| T |
33908729 |
ctaatttgattgattgtgtgttgaataaaatgtacaagt |
33908691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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