View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_6 (Length: 442)
Name: NF14181_low_6
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 258 - 426
Target Start/End: Original strand, 24479442 - 24479610
Alignment:
| Q |
258 |
atgggatgaaaatatgacttgggtttttggttgcattgcaattgacttttacactatgatgaagccgccattagattcaagggtaattgcttccaactat |
357 |
Q |
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| T |
24479442 |
atgggatgaaaatatgacttgggtttttggttgcattgcaattgacttttacactatgatgaagccgccattagattcaagggtaattgcttccaactat |
24479541 |
T |
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| Q |
358 |
tttaacactctccattagcaaggtgaagcaaaatataatctcatttcattaccacattagtattagttg |
426 |
Q |
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| T |
24479542 |
tttaacactctccattagcaaggtgaagcaaaatataatctcatttcattaccacattagtattagttg |
24479610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 24479196 - 24479369
Alignment:
| Q |
4 |
tcgagtgagatgaagaagaataaggttttggtagttatagaactgtgaatgtgaatttatataaagannnnnnnnnnnnnnaggtgcgaggattgaagat |
103 |
Q |
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| T |
24479196 |
tcgagagaaatgaagaagaataaggttttggtagttatagaactgtgaatgtgaatttatataaagagtgtgtgtgtgt--aggtgcgaggattgaagat |
24479293 |
T |
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| Q |
104 |
ttagagttagaggtactttctgaacaagaaaggtaaattcattgagttgaagagagaggtgaagtgtgaaactgaa |
179 |
Q |
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| T |
24479294 |
ttagagtcagaggtactttctgaacaagaaaggtaaattcattgagttgaagagaaaggagaagtgtgaaactgaa |
24479369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 24461088 - 24461181
Alignment:
| Q |
310 |
actatgatgaagccgccattagattca--agggtaattgcttccaactattttaacactctccattagcaaggtgaagcaaaatataatctcat |
401 |
Q |
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| T |
24461088 |
actatgatgaggccgtcattagattcacaaggttaattgcttccaaccattttaacactctccattagcaaggtgatgtaaaatctaatctcat |
24461181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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