View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14181_low_7 (Length: 436)

Name: NF14181_low_7
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14181_low_7
NF14181_low_7
[»] chr3 (10 HSPs)
chr3 (63-436)||(772626-772998)
chr3 (252-298)||(10371227-10371273)
chr3 (101-173)||(37032194-37032265)
chr3 (252-298)||(44953389-44953435)
chr3 (258-298)||(7469732-7469772)
chr3 (258-298)||(29858529-29858569)
chr3 (258-298)||(39728765-39728805)
chr3 (258-298)||(42758468-42758508)
chr3 (258-298)||(48305595-48305635)
chr3 (258-298)||(48390771-48390811)
[»] chr8 (12 HSPs)
chr8 (63-173)||(6388601-6388710)
chr8 (74-179)||(29918501-29918605)
chr8 (248-298)||(17469327-17469377)
chr8 (258-298)||(4230684-4230724)
chr8 (103-173)||(30903969-30904038)
chr8 (258-298)||(34139540-34139580)
chr8 (258-301)||(32303155-32303198)
chr8 (101-173)||(39379675-39379745)
chr8 (258-298)||(2075788-2075828)
chr8 (258-298)||(24928043-24928083)
chr8 (258-298)||(27932507-27932547)
chr8 (258-298)||(29108776-29108816)
[»] chr5 (7 HSPs)
chr5 (218-298)||(12447422-12447502)
chr5 (103-173)||(35584040-35584108)
chr5 (258-298)||(5908643-5908683)
chr5 (258-298)||(12834529-12834569)
chr5 (258-298)||(12866506-12866546)
chr5 (258-298)||(30996690-30996729)
chr5 (258-298)||(33727956-33727996)
[»] chr2 (10 HSPs)
chr2 (101-173)||(13531871-13531942)
chr2 (103-173)||(25210301-25210370)
chr2 (258-298)||(13830830-13830870)
chr2 (236-298)||(6027855-6027918)
chr2 (103-179)||(30696848-30696923)
chr2 (258-298)||(7314602-7314642)
chr2 (106-172)||(13954672-13954737)
chr2 (106-172)||(14095879-14095944)
chr2 (258-298)||(30847041-30847081)
chr2 (258-298)||(36128060-36128100)
[»] chr1 (13 HSPs)
chr1 (248-298)||(49740980-49741030)
chr1 (101-173)||(5283689-5283760)
chr1 (258-298)||(20774661-20774701)
chr1 (258-298)||(23968674-23968714)
chr1 (103-173)||(39219182-39219251)
chr1 (254-292)||(5181130-5181168)
chr1 (105-168)||(8880374-8880436)
chr1 (258-298)||(12495105-12495145)
chr1 (258-298)||(16409037-16409077)
chr1 (258-298)||(16433133-16433173)
chr1 (258-298)||(19572466-19572506)
chr1 (258-298)||(34673236-34673276)
chr1 (258-298)||(51421953-51421993)
[»] chr4 (14 HSPs)
chr4 (91-173)||(21714072-21714153)
chr4 (107-173)||(42907820-42907884)
chr4 (103-172)||(39086085-39086152)
chr4 (91-179)||(7334276-7334361)
chr4 (103-173)||(12075728-12075797)
chr4 (103-173)||(36919052-36919121)
chr4 (258-298)||(44317635-44317675)
chr4 (138-173)||(21956911-21956946)
chr4 (101-173)||(25265244-25265314)
chr4 (105-173)||(35304614-35304680)
chr4 (258-298)||(26564931-26564971)
chr4 (258-298)||(31918513-31918553)
chr4 (258-298)||(43893327-43893367)
chr4 (258-298)||(47550308-47550348)
[»] chr6 (10 HSPs)
chr6 (216-297)||(14506125-14506207)
chr6 (248-298)||(32959932-32959982)
chr6 (248-298)||(7393853-7393903)
chr6 (106-173)||(14321793-14321859)
chr6 (258-298)||(3483877-3483917)
chr6 (258-298)||(5863337-5863377)
chr6 (103-173)||(9402512-9402581)
chr6 (258-298)||(10188034-10188074)
chr6 (258-298)||(14255051-14255091)
chr6 (258-298)||(32053176-32053216)
[»] scaffold1322 (1 HSPs)
scaffold1322 (106-173)||(1037-1103)
[»] chr7 (11 HSPs)
chr7 (254-298)||(30650726-30650770)
chr7 (63-173)||(31345414-31345523)
chr7 (258-298)||(3226900-3226940)
chr7 (258-298)||(7780107-7780147)
chr7 (258-298)||(10072565-10072605)
chr7 (258-298)||(16866268-16866308)
chr7 (258-298)||(17885564-17885604)
chr7 (258-298)||(18825820-18825860)
chr7 (258-298)||(21702758-21702798)
chr7 (258-298)||(38139746-38139786)
chr7 (258-298)||(44658421-44658461)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 63 - 436
Target Start/End: Complemental strand, 772998 - 772626
Alignment:
Q  63 tatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaatt 162  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  772998 tatgacaagcgagtgtcatctagaagtgtgagacttagattgtgtgagtgaaatgattcaaggtttgagtttct--atttatacaaaagggtaataaatt 772901  T
Q  163 gattttctacacttggg-catgagttcgggatagatta----tgggtagatatatctctgttacctatcccatatttgtgttttacaatcgggaaaacct 257  Q
    ||||||||| | ||||| ||| | || || ||   ||     |||||||||||||| ||||||||| ||||||||||||||||||||||||  |||||||    
T  772900 gattttctatatttgggacat-atttgggcatgagttcggggtgggtagatatatccctgttacctgtcccatatttgtgttttacaatcg--aaaacct 772804  T
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttgtttnnnnnnnatgaattttgttgtcgtgtgtaaccagacccaaaagtatcattactaga 357  Q
    |||||||||||||||||||||||| |||||||||||||||| ||       ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  772803 aaacccagtcaaaatgaggaaaattcgtcaaattgggtttggtttgggggtatgaattttgttgtcgtgtgtaaccagacacaaaagtatcattactaga 772704  T
Q  358 caaaaatcaaccttttttcacacgaaaggtgtggattaagcttcaaagaccaaaacaaaatattcacaccgtgttttgt 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  772703 caaaaatcaaccttttttcacacgaaaggtgtggattaagcttcaaagaccaaaac-aaatattcacaccgtgttttgt 772626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 10371273 - 10371227
Alignment:
Q  252 aaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||||    
T  10371273 aaacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttg 10371227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 37032265 - 37032194
Alignment:
Q  101 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    ||||| |||||||||||||| | ||||||||||  | |||||||| |||| |||||||||||| ||||||||||    
T  37032265 attgtatgagtgaaatgatttagggtttgagtt--tttatttatataaaatgggtaataaattaattttctaca 37032194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 44953435 - 44953389
Alignment:
Q  252 aaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||||    
T  44953435 aaacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttg 44953389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 7469772 - 7469732
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  7469772 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 7469732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 29858569 - 29858529
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||| ||||||||||||    
T  29858569 aaacccagtcaaaacggggaaaatccgttaaattgggtttg 29858529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 39728765 - 39728805
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  39728765 aaacccagtcaaaacggggaaaatccgtcaaattggatttg 39728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 42758468 - 42758508
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||||| |||| | ||||||||||||||||||||||||    
T  42758468 aaacccagttaaaacggggaaaatccgtcaaattgggtttg 42758508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 48305635 - 48305595
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  48305635 aaacccagtcaaaatggggaaaacccgtcagattgggtttg 48305595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 48390811 - 48390771
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  48390811 aaacccagtcaaaacggggaaaatccgtcaaattggatttg 48390771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 6388710 - 6388601
Alignment:
Q  63 tatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaatt 162  Q
    ||||| ||| ||||||||| |  |||| |||||||  ||||||||||||||||||||| | |||||| |||||| | | |||| ||| ||||||||||||    
T  6388710 tatgataagtgagtgtcattttaaagtctgagactctaattgtgtgagtgaaatgatttagggtttgggtttctgtttatata-aaatgggtaataaatt 6388612  T
Q  163 gattttctaca 173  Q
    |||||||||||    
T  6388611 gattttctaca 6388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 29918501 - 29918605
Alignment:
Q  74 agtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaag-ggtaataaattgattttctac 172  Q
    ||||||||||  |||  |||||||  || |||||||||||||||||| | ||||||||||  |||||||||| ||||| ||||||||||||||||| |||    
T  29918501 agtgtcatctgaaagattgagactctaactgtgtgagtgaaatgatttagggtttgagtt--tctatttatataaaagaggtaataaattgattttttac 29918598  T
Q  173 acttggg 179  Q
    | |||||    
T  29918599 atttggg 29918605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 17469327 - 17469377
Alignment:
Q  248 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  17469327 gggaaaacccaaacccagtcaaaacggggaaaatccgtcaaattgggtttg 17469377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 4230724 - 4230684
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  4230724 aaacccagtcaaaatggggaaaacccgtcaaattgggtttg 4230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 30903969 - 30904038
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    |||||||||||||||||| |||||||  |||  |||||||||| |||| | |||||||||||||||||||||    
T  30903969 tgtgtgagtgaaatgatttaaggttttggtt--tctatttatataaaatgtgtaataaattgattttctaca 30904038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 34139540 - 34139580
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  34139540 aaacccagtcaaaacgaggaaaacccgtcaaattgggtttg 34139580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 32303155 - 32303198
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttgttt 301  Q
    |||||||||||||| | |||||| ||||||||||||||||||||    
T  32303155 aaacccagtcaaaacggggaaaacccgtcaaattgggtttgttt 32303198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 39379745 - 39379675
Alignment:
Q  101 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 173  Q
    ||||||| |||||||||||| ||| ||||  |||||  ||||||||| |||| |||||||||||||| |||||    
T  39379745 attgtgtaagtgaaatgatttaagatttggatttct--atttatacagaaggataataaattgatttactaca 39379675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 2075828 - 2075788
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  2075828 aaacccagtcaaaacggagaaaatccgtcaaattgggtttg 2075788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 24928043 - 24928083
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  24928043 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 24928083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 27932507 - 27932547
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  27932507 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 27932547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 29108816 - 29108776
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  29108816 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 29108776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 12447422 - 12447502
Alignment:
Q  218 ttacctatcccatatttgtgttttacaatcg-ggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||| |||||||  ||||||||||||||  |||||||| |||||||||||||||| || |||||||||||||||||||||    
T  12447422 ttacctgtcccatacctgtgttttacaatcaaggaaaacccaaacccagtcaaaatg-gggaaatccgtcaaattgggtttg 12447502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 35584040 - 35584108
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 173  Q
    ||||||||  |||||||| | |||||||||||||  ||||||| |||||||||||||||||||||| ||||    
T  35584040 tgtgtgagcaaaatgatttagggtttgagtttct--atttatataaaagggtaataaattgattttgtaca 35584108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 5908683 - 5908643
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  5908683 aaacccaatcaaaatggggaaaacccgtcaaattgggtttg 5908643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 12834569 - 12834529
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  12834569 aaacccagtcaaaatggggaaaacccgtcaaattgagtttg 12834529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 12866546 - 12866506
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  12866546 aaacccagtcaaaatggggaaaacccgtcaaattggatttg 12866506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 30996690 - 30996729
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  30996690 aaacccagtcaaaacg-ggaaaatccgtcaaattgggtttg 30996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 33727996 - 33727956
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  33727996 aaacccaatcaaaacggggaaaatccgtcaaattgggtttg 33727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 13531871 - 13531942
Alignment:
Q  101 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    |||||||||||||||||||| | ||||||||||  |||||||||| |||| || ||||||||||||||||||||    
T  13531871 attgtgtgagtgaaatgatttagggtttgagtt--tctatttatataaaatggataataaattgattttctaca 13531942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 25210301 - 25210370
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    |||||||||||||||||| | ||||||||||  |||||||||| |||| |||||| ||||||||||||||||    
T  25210301 tgtgtgagtgaaatgatttagggtttgagtt--tctatttatataaaatgggtaacaaattgattttctaca 25210370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 13830830 - 13830870
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  13830830 aaacccagtcaaaatggggaaaacccgtcaaattgggtttg 13830870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 6027918 - 6027855
Alignment:
Q  236 tgttttacaatcggg-aaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||| ||||||| |||||| ||||||| |||||| | |||||| |||||||||||||||||    
T  6027918 tgttttaaaatcggggaaaacccaaacccaatcaaaacggggaaaacccgtcaaattgggtttg 6027855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 30696848 - 30696923
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctacacttggg 179  Q
    ||||||||||| |||||| | ||||||| |||||  ||||||| |||| |||||||||||||||||| |||| |||||    
T  30696848 tgtgtgagtgacatgatttagggtttgaatttct--atttatataaaatgggtaataaattgattttttacatttggg 30696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 7314642 - 7314602
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  7314642 aaacccagtcaaaacggggaaaatccgtcaaattgagtttg 7314602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 13954672 - 13954737
Alignment:
Q  106 gtgagtgaaatgattcaaggtttgagtttctctatttatacaaaag-ggtaataaattgattttctac 172  Q
    ||||||||||||||| | |||| |||||  |||||||||| ||||| |||||||| ||||||||||||    
T  13954672 gtgagtgaaatgatttagggttcgagtt--tctatttatataaaagtggtaataagttgattttctac 13954737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 14095879 - 14095944
Alignment:
Q  106 gtgagtgaaatgattcaaggtttgagtttctctatttatacaaaag-ggtaataaattgattttctac 172  Q
    ||||||||||||||| | |||| |||||  |||||||||| ||||| |||||||| ||||||||||||    
T  14095879 gtgagtgaaatgatttagggttcgagtt--tctatttatataaaagtggtaataagttgattttctac 14095944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 30847041 - 30847081
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  30847041 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 30847081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 36128100 - 36128060
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  36128100 aaacccagtcaaaacggggaaaatccgtcaaattaggtttg 36128060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 49741030 - 49740980
Alignment:
Q  248 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  49741030 gggaaaacctaaacccagtcaaaaaggggaaaatccgtcaaattgagtttg 49740980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 5283760 - 5283689
Alignment:
Q  101 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaaggg-taataaattgattttctaca 173  Q
    |||||||||| ||||||||| || ||||||||| ||  ||||||||||||||| | ||||||||||||||||||    
T  5283760 attgtgtgagagaaatgatttaaagtttgagttcct--atttatacaaaagggatgataaattgattttctaca 5283689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 20774661 - 20774701
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  20774661 aaacccagtcaaaacggggaaaatccgtcaaattgggtttg 20774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 23968674 - 23968714
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  23968674 aaacccaatcaaaatggggaaaatccgtcaaattgggtttg 23968714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 39219182 - 39219251
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaag-ggtaataaattgattttctaca 173  Q
    |||||||| ||||||||| | ||||||||||  |||||||||| ||||| ||||||||||| ||||||||||    
T  39219182 tgtgtgagcgaaatgatttagggtttgagtt--tctatttatataaaagaggtaataaattaattttctaca 39219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 5181130 - 5181168
Alignment:
Q  254 acctaaacccagtcaaaatgaggaaaatccgtcaaattg 292  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  5181130 acctaaacccagtcaaaatggggaaaacccgtcaaattg 5181168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 8880374 - 8880436
Alignment:
Q  105 tgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgatttt 168  Q
    |||||||||||||||| || |||||||||  |||||||||| |||| |||||||||||| |||||    
T  8880374 tgtgagtgaaatgatttaaagtttgagtt--tctatttataaaaaaggggtaataaatttatttt 8880436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 12495105 - 12495145
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  12495105 aaacccagtcaaagtggggaaaatccgtcaaattggatttg 12495145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 16409037 - 16409077
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  16409037 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 16409077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 16433173 - 16433133
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  16433173 aaacccaatcaaaatggggaaaatccgtcaaattgagtttg 16433133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 19572506 - 19572466
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  19572506 aaacccagtcaaaatggggaaaacccgtcaaattaggtttg 19572466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 34673276 - 34673236
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||||| |||||| ||||||||||| ||||||||||||    
T  34673276 aaacccagttaaaatggggaaaatccgttaaattgggtttg 34673236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 51421953 - 51421993
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  51421953 aaacccagtcaaaatggggaaaacccatcaaattgggtttg 51421993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 21714153 - 21714072
Alignment:
Q  91 tgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaag-ggtaataaattgattttctaca 173  Q
    |||||||  |||||||| |||||||||||| | ||||||||||  |||||||||| ||||| ||||||||||| ||||||||||    
T  21714153 tgagactctaattgtgtaagtgaaatgatttagggtttgagtt--tctatttatataaaagaggtaataaattaattttctaca 21714072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 42907820 - 42907884
Alignment:
Q  107 tgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 173  Q
    |||||||||||||| | |||||||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttct--atttatataaaagagtagtaaattgattttctaca 42907884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 39086085 - 39086152
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctac 172  Q
    |||||||||||||||||| | ||||| |||||||  ||||||| |||| |||| ||||||||||||||||    
T  39086085 tgtgtgagtgaaatgatttagggtttaagtttct--atttatataaaaaggtagtaaattgattttctac 39086152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 7334361 - 7334276
Alignment:
Q  91 tgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctacacttggg 179  Q
    |||||||| || |||||||||||||||||| |  |||||||||  |||||||||| |||| | |||||||||||||||| ||| |||||    
T  7334361 tgagactttaactgtgtgagtgaaatgatttagagtttgagtt--tctatttata-aaaacgataataaattgattttcaacatttggg 7334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 12075797 - 12075728
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    |||||| |||||||||||||  |||| |||||||  ||||||| |||| |||||||||||||||||||||||    
T  12075797 tgtgtgggtgaaatgattcagagttttagtttct--atttatataaaatgggtaataaattgattttctaca 12075728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 36919052 - 36919121
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaag-ggtaataaattgattttctaca 173  Q
    |||||||||||||||||| |  |||||||||  |||||||||| ||||| ||||||||| ||||||||||||    
T  36919052 tgtgtgagtgaaatgatttagagtttgagtt--tctatttatataaaagtggtaataaactgattttctaca 36919121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 44317635 - 44317675
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  44317635 aaacccagtcaaaacggggaaaatccgtcaaattgggtttg 44317675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 21956946 - 21956911
Alignment:
Q  138 tatttatacaaaagggtaataaattgattttctaca 173  Q
    |||||||| |||||||||||||||||||||||||||    
T  21956946 tatttatataaaagggtaataaattgattttctaca 21956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 25265314 - 25265244
Alignment:
Q  101 attgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 173  Q
    ||||||||||| |||||||| |   |||||||||||  ||||||| | |||| ||||||||||||||||||||    
T  25265314 attgtgtgagtaaaatgatttagaatttgagtttct--atttatatagaaggataataaattgattttctaca 25265244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 35304680 - 35304614
Alignment:
Q  105 tgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaattgattttctaca 173  Q
    |||| ||||||||||| |  |||||||||||| |  ||||| ||||||||||||||||||||| |||||    
T  35304680 tgtgggtgaaatgatttagagtttgagtttcttt--ttatataaaagggtaataaattgatttcctaca 35304614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 26564931 - 26564971
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| || |||||||||||||||||| ||||    
T  26564931 aaacccagtcaaaacgaagaaaatccgtcaaattggatttg 26564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 31918553 - 31918513
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  31918553 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 31918513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 43893327 - 43893367
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  43893327 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 43893367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 47550348 - 47550308
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  47550348 aaacccagtcaaaatggggaaaatccgccaaattgagtttg 47550308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 14506125 - 14506207
Alignment:
Q  216 tgttacctatcccatatttgtgttttacaatcggg-aaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggttt 297  Q
    |||||||  |||||||  ||||||||  ||||||| |||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  14506125 tgttacccgtcccatacctgtgttttgaaatcggggaaaacccaaacccagtcaaaatggggaaaacccgtcaaattgagttt 14506207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 32959932 - 32959982
Alignment:
Q  248 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||    
T  32959932 gggaaaacccaaacccaatcaaaacgaggaaaatccgtcaaattaggtttg 32959982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 7393903 - 7393853
Alignment:
Q  248 gggaaaacctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    ||||||| | ||||||| |||||||| ||||||||||||||||||| ||||    
T  7393903 gggaaaatccaaacccaatcaaaatggggaaaatccgtcaaattggatttg 7393853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 14321793 - 14321859
Alignment:
Q  106 gtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    ||||||||||||||| ||| ||||||||  |||||||||| ||||  ||||||||||| ||||||||||    
T  14321793 gtgagtgaaatgatttaagatttgagtt--tctatttatataaaataggtaataaattaattttctaca 14321859  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 3483917 - 3483877
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  3483917 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 3483877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 5863377 - 5863337
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  5863377 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 5863337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 9402512 - 9402581
Alignment:
Q  103 tgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaa-agggtaataaattgattttctaca 173  Q
    |||||||||||||||||| | |||||| |||  |||||||||| |||  ||||| |||||||||||||||||    
T  9402512 tgtgtgagtgaaatgatttagggtttgggtt--tctatttatataaatggggtactaaattgattttctaca 9402581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 10188074 - 10188034
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  10188074 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 10188034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 14255051 - 14255091
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| |||||||||| |||||| ||||||||    
T  14255051 aaacccagtcaaaacgaggaaaatctgtcaaaatgggtttg 14255091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 32053176 - 32053216
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  32053176 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 32053216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 1037 - 1103
Alignment:
Q  106 gtgagtgaaatgattcaaggtttgagtttctctatttatacaaaa-gggtaataaattgattttctaca 173  Q
    ||||||||||||||| ||| ||||||||  |||||||||| |||| |||||||||||| ||||||||||    
T  1037 gtgagtgaaatgatttaagatttgagtt--tctatttatataaaatgggtaataaattaattttctaca 1103  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 30650726 - 30650770
Alignment:
Q  254 acctaaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||||||| | |||||| |||||||||||||||||    
T  30650726 acctaaacccagtcaaaacggggaaaacccgtcaaattgggtttg 30650770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 31345414 - 31345523
Alignment:
Q  63 tatgacaagcgagtgtcatctagaagtgtgagacttaaattgtgtgagtgaaatgattcaaggtttgagtttctctatttatacaaaagggtaataaatt 162  Q
    ||||| ||| |||||||||||| | |  ||||||||  |||||||||||||||||||  |  |||||||||||| | | |||| |||| |||| ||||||    
T  31345414 tatgataagtgagtgtcatctaaatgactgagactttgattgtgtgagtgaaatgatatagagtttgagtttctatttatata-aaaatggtagtaaatt 31345512  T
Q  163 gattttctaca 173  Q
    |||||| ||||    
T  31345513 gattttttaca 31345523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 3226940 - 3226900
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||| |||| |||| ||||||||||||||||||||||||||    
T  3226940 aaactcagttaaaacgaggaaaatccgtcaaattgggtttg 3226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 7780107 - 7780147
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  7780107 aaacccagtcaaaacggggaaaatccgtcaaattgagtttg 7780147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 10072565 - 10072605
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  10072565 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 10072605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 16866268 - 16866308
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  16866268 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 16866308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 17885564 - 17885604
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  17885564 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 17885604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 18825860 - 18825820
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  18825860 aaacccagtcaaaacggggaaaacccgtcaaattgggtttg 18825820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 21702758 - 21702798
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  21702758 aaacccagtcaaaacgggaaaaatccgtcaaattgggtttg 21702798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 38139786 - 38139746
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  38139786 aaacccagtcaaaacggggaaaatccatcaaattgggtttg 38139746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 44658461 - 44658421
Alignment:
Q  258 aaacccagtcaaaatgaggaaaatccgtcaaattgggtttg 298  Q
    |||||||||||||| |||||||| |||||||||||| ||||    
T  44658461 aaacccagtcaaaacgaggaaaacccgtcaaattggatttg 44658421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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