View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_8 (Length: 415)
Name: NF14181_low_8
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 18110616 - 18110844
Alignment:
| Q |
1 |
aaaatttgctgctacttcttctcagttcgtgacgagaattgctgaagggaaattgagtggtgaagagaaacatttggttgaaaatgtaggtgctgcagtt |
100 |
Q |
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| T |
18110616 |
aaaatttgctgctacttcttctcagtttgtgacgagaattgctgaagggaaattgagtggtgaagagaaacatttagttgaaaatgtaggtgctgcagtt |
18110715 |
T |
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| Q |
101 |
ctagtgattgctgcatttggagcctatgtgtcatattggttttcctcttaaaggagaactacataattaactagttctactcattcctttctcacacttg |
200 |
Q |
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| T |
18110716 |
ctagtgattgctgcatttggagcctatgtgtcatattggttttcctcttaaaggagaactacataatttactagttctactcattc----ctcacacttg |
18110811 |
T |
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| Q |
201 |
cacatcaataaatgatgaaccatatatcatggt |
233 |
Q |
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| T |
18110812 |
cacatcaataaatgatgaaccatatatcatggt |
18110844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 233 - 403
Target Start/End: Original strand, 18110894 - 18111064
Alignment:
| Q |
233 |
tatcaaatgcaaagttgtaatgatcttacttgattatatataaattattatctattatctcagacgatggttttcaactgtggatgcggtcgcagttatg |
332 |
Q |
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| T |
18110894 |
tatcaaatgcaaagttgtaatgatcttacttgattatatataaattattatctattatctcagacgatggttttcaactgtggatgcggtcgcagttatg |
18110993 |
T |
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| Q |
333 |
atcactcaacaaacctttatattgcagaaaaaagcgcgaaaatacagccgatgcaaccaaagttgttgttg |
403 |
Q |
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| T |
18110994 |
atcactcaacaaacctttatattgcagaaaaatgcgcgaaaatacagccgatgcaaccaaagttgttgttg |
18111064 |
T |
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