View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14181_low_9 (Length: 373)
Name: NF14181_low_9
Description: NF14181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14181_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 21219221 - 21218871
Alignment:
| Q |
9 |
acatcatcatactcctggaatcttgattatattttactaaatagttgttttgtgcaactatagtacttgattcactgattacactatcgtacttttgatg |
108 |
Q |
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| T |
21219221 |
acatcatcatactcctggaatcttgattatattttactaaatagttgttttgtgcaactatagtacttgattcactgattacactatcgtacttttgatg |
21219122 |
T |
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| Q |
109 |
agatcttttagtatacagcaatgtttgactgatttgtcagctgtgctgatatatcctggttaatggatcattttatttattgttttgtgtgtatgtatgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21219121 |
agatcttttagtatacagcaatgtttgactgatttgtcaactgtgctgatatatcctggttaatggatcattttatttattgttctgtgtgtatgtatgt |
21219022 |
T |
|
| Q |
209 |
atcgattctataagattttgtgtcattgtaatatacatccctaatgtaattatttgttttttgtcttctgtgctcagcggatcctaagggaatagagctc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219021 |
atcgattctataagattttgtgtcattgtaatatacatccctaatgtaattatttgttttttgtcttctgtgctcagcggatcctaagggaatagagctc |
21218922 |
T |
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| Q |
309 |
ataattcctgactgttgcgaagcaaggcaggttaccccaatgaagatatat |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21218921 |
ataattcctgactgttgcgaagcaaggcaggttaccccaatgaagatatat |
21218871 |
T |
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