View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14182_high_3 (Length: 389)
Name: NF14182_high_3
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14182_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 40285937 - 40285565
Alignment:
| Q |
1 |
agataaaacatgggttatataacgactttgaaactcttgatttgtcagcttgttctaggtaacacagtggttttaatacnnnnnnnatgaggtgaggaag |
100 |
Q |
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| T |
40285937 |
agataaaacatgggttatataacgactttgaaactcttgatttgtcagcttgttctaggtaacacagtggttttaatactttttttatgaggtgaggaag |
40285838 |
T |
|
| Q |
101 |
aagtgaaaattttaatttgagtggttaaaacatacatgcaggtttctttcagaacttcaagttttggtgcaatttctgtgggatgtacagggagaagctt |
200 |
Q |
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| T |
40285837 |
aagtgaaaattttaatttgagtggttaaaacatacatgcaggtttctttcagaacttcaagttttggtgcaatttctgtgggatgtacaaggagaagctt |
40285738 |
T |
|
| Q |
201 |
tccttcgttgagatcttctcgtttccgcatttgtgcagtaagtttgaaattcattttgacttttttaaaaaacttgcaaggaacaataataactttgaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40285737 |
tccttcgttgagatcttctcgtttccgcatttgtgcagtaagtttgaaattcattttgacttttttaaaaaacttgcaaggaacaataataactttgaat |
40285638 |
T |
|
| Q |
301 |
tttgttaaaagattcaggcacaacctgagacagtggagaaagtgagcaaaattgtgaggaaacaacttgcttt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40285637 |
tttgttaaaagattcaggcacaacctgagacagtggagaaagtgagcaaaattgtgaggaaacaacttgcttt |
40285565 |
T |
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