View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14182_high_5 (Length: 341)

Name: NF14182_high_5
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14182_high_5
NF14182_high_5
[»] chr6 (10 HSPs)
chr6 (1-208)||(31055701-31055912)
chr6 (232-335)||(31056786-31056891)
chr6 (235-325)||(31080662-31080752)
chr6 (232-318)||(31045963-31046049)
chr6 (232-289)||(31027122-31027179)
chr6 (232-319)||(31096265-31096352)
chr6 (232-289)||(31035533-31035590)
chr6 (240-309)||(31059173-31059242)
chr6 (232-289)||(31110547-31110604)
chr6 (232-323)||(31070017-31070109)
[»] scaffold0018 (1 HSPs)
scaffold0018 (232-323)||(170676-170767)
[»] scaffold0202 (1 HSPs)
scaffold0202 (259-306)||(4968-5015)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 31055701 - 31055912
Alignment:
Q  1 tttgattgttatcgagtataattgaccgacactaatgatccatcaaagttgaggacaacttaacctactgtata----cgatcatttctcacatcactca 96  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    |||||||||||| |||||||||    
T  31055701 tttggttgttatcgagtataattgaccgacactaatgatccatcagagttgaggacaacttaacttactgtatatatacgatcatttctcgcatcactca 31055800  T
Q  97 tgatttttcaaaagcttattgattgtcatccaacatatcatgattcagtagttggacgacaaaatattgttgaacccatgatcatttatacttcactaaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31055801 tgatttttcaaaagcttattgattgtcatccaacatatcatgattcagtagttggacgacaaaatattgttgaacccatgatcatttatactccactaaa 31055900  T
Q  197 tgtgatcaagca 208  Q
    ||||||||||||    
T  31055901 tgtgatcaagca 31055912  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 31056786 - 31056891
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttgg--cacccaatctcatattgatg 329  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||| ||    
T  31056786 atcgagtatgtgttaaaacaggcaggaaggtttacatataaaataagattgtatatcaaatattaactcatagtttggcacacccaatctcatattgctg 31056885  T
Q  330 atgtcc 335  Q
     |||||    
T  31056886 ctgtcc 31056891  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 31080662 - 31080752
Alignment:
Q  235 gagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatctcatatt 325  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||| ||||||| | |||| ||||||||||| |  || ||||||||||||    
T  31080662 gagtatgtgttaaaacatgcacgaaggtttacctataaaataagagtgtatataacttatcaactcatagttggagactcaatctcatatt 31080752  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 31045963 - 31046049
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatc 318  Q
    |||||||||||||||||||| ||| |||| ||| | |||||||||||| |||||||||   |||| ||||||||| || ||||||||    
T  31045963 atcgagtatgtgttaaaacaggcatgaagatttccctataaaataagagtgtatatcacccattatctcatagttggggacccaatc 31046049  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 31027122 - 31027179
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 289  Q
    |||||||||||||||||||| |||   |||||||| |||||||||||| |||||||||    
T  31027122 atcgagtatgtgttaaaacaggcacagaggtttacctataaaataagagtgtatatca 31027179  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 31096352 - 31096265
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatct 319  Q
    |||||||||  ||||||| | |||  ||| ||||| |||||||||||| |||| |||| |||||||| ||||||| || |||||||||    
T  31096352 atcgagtatacgttaaaataggcactaagttttacttataaaataagagtgtacatcacttattaacacatagttggggacccaatct 31096265  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 31035533 - 31035590
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 289  Q
    ||||||||||||||||||||  || |||||||| | ||||||| |||| |||||||||    
T  31035533 atcgagtatgtgttaaaacagtcatgaaggttttcctataaaagaagagtgtatatca 31035590  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 31059173 - 31059242
Alignment:
Q  240 tgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttgg 309  Q
    ||||| |||||| |||  ||| ||||| |||||||||||| ||||||||| ||| | |||||||||||||    
T  31059173 tgtgtaaaaacaggcacaaagatttacctataaaataagagtgtatatcatttacttactcatagtttgg 31059242  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 31110547 - 31110604
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 289  Q
    |||||||||||||||||||| | | ||| |||||| |||||||||||  |||||||||    
T  31110547 atcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca 31110604  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 323
Target Start/End: Original strand, 31070017 - 31070109
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcac-ccaatctcata 323  Q
    |||||| |||||| ||||||  ||| ||| ||||| |||||||||||| |||||||||   ||||| |||||||| || || |||||||||||    
T  31070017 atcgaggatgtgtcaaaacagtcagaaagatttacctataaaataagagtgtatatcaccaattaagtcatagttggggactccaatctcata 31070109  T

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Target: scaffold0018 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 170767 - 170676
Alignment:
Q  232 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatctcata 323  Q
    ||||||||| ||||||||||   | |||||||||| |||||||||||| ||| ||||| |||||||| ||||||| || |||||||||||||    
T  170767 atcgagtatatgttaaaacatagaagaaggtttacctataaaataagagtgtgtatcacttattaacccatagttggggacccaatctcata 170676  T

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Target: scaffold0202 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 5015 - 4968
Alignment:
Q  259 aggtttacatataaaataagaatgtatatcaattattaactcatagtt 306  Q
    |||||||  |||||||||||| ||||||||| ||||||||||||||||    
T  5015 aggtttatctataaaataagagtgtatatcacttattaactcatagtt 4968  T

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