View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14182_high_7 (Length: 252)
Name: NF14182_high_7
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14182_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 558629 - 558741
Alignment:
| Q |
1 |
taaatttttgtaaaccattcctcacaacccactactgccatacacatctccatggccgaaatggcacgaccaaacataccgctcacacaaggaaagtgca |
100 |
Q |
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| T |
558629 |
taaatttttgtaaaccattcctcacaacccactactgccatacacatctacatggccgaaatggcacgaccaaacataccgctcacacaaggaaagtgca |
558728 |
T |
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| Q |
101 |
aattgtctccttc |
113 |
Q |
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| T |
558729 |
aattgtctccttc |
558741 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 558801 - 558877
Alignment:
| Q |
174 |
cgagccaattccattttattctttcttaaaaattggatttaatcaccaacttagttaggtctagcaaaagagctaaa |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
558801 |
cgagccaattccattttattctttcttaaaaattggatttaatcaccaacttagttaggtctagcaaaagagctaaa |
558877 |
T |
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