View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14182_low_1 (Length: 640)

Name: NF14182_low_1
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14182_low_1
NF14182_low_1
[»] chr4 (5 HSPs)
chr4 (264-632)||(27637431-27637799)
chr4 (266-625)||(37353626-37353985)
chr4 (266-625)||(37365600-37365959)
chr4 (377-558)||(12292496-12292680)
chr4 (388-607)||(12242707-12242929)
[»] chr8 (1 HSPs)
chr8 (21-252)||(27514357-27514589)
[»] chr1 (1 HSPs)
chr1 (22-187)||(39209354-39209519)
[»] chr2 (3 HSPs)
chr2 (377-633)||(34697785-34698044)
chr2 (377-633)||(34720197-34720456)
chr2 (386-467)||(27909926-27910007)
[»] chr6 (1 HSPs)
chr6 (108-235)||(23016965-23017092)
[»] chr5 (2 HSPs)
chr5 (192-251)||(36407015-36407074)
chr5 (192-244)||(18449208-18449260)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 264 - 632
Target Start/End: Original strand, 27637431 - 27637799
Alignment:
Q  264 acaaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaa 363  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |     
T  27637431 acaaaataaatgaaacatcatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgagctattgtaataacatttttgacag 27637530  T
Q  364 taatatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg 463  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637531 taatatcaattttaaatcgaattctgaatctcgataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg 27637630  T
Q  464 aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637631 aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct 27637730  T
Q  564 gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcatctc 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27637731 gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctc 27637799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 266 - 625
Target Start/End: Original strand, 37353626 - 37353985
Alignment:
Q  266 aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata 365  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |  | |||||  |||  |||||| | ||    
T  37353626 aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta 37353725  T
Q  366 atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa 465  Q
    |||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37353726 atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa 37353825  T
Q  466 gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga 565  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |    
T  37353826 gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta 37353925  T
Q  566 cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctct 625  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  37353926 cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttactctct 37353985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 266 - 625
Target Start/End: Original strand, 37365600 - 37365959
Alignment:
Q  266 aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata 365  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |  | |||||  |||  |||||| | ||    
T  37365600 aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta 37365699  T
Q  366 atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa 465  Q
    |||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37365700 atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa 37365799  T
Q  466 gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga 565  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |    
T  37365800 gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta 37365899  T
Q  566 cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctct 625  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  37365900 cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttactctct 37365959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 558
Target Start/End: Complemental strand, 12292680 - 12292496
Alignment:
Q  377 aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct 476  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| ||||||||    
T  12292680 aaatcaaattctgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcct 12292581  T
Q  477 acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttca 558  Q
    |||||| | |||||||||| |    | |||||| |||||||||| ||||||||    ||||||| ||||||| ||||||||||||    
T  12292580 acatggtataaataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttca 12292496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 388 - 607
Target Start/End: Complemental strand, 12242929 - 12242707
Alignment:
Q  388 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 487  Q
    ||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| |||||||||||||    
T  12242929 tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa 12242830  T
Q  488 ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca 584  Q
    |||||||| |   || | |||| ||||| |||| |||||||   | ||||||| ||||||| ||||| ||||||  ||| || || || |||||||| ||    
T  12242829 ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca 12242730  T
Q  585 acttgattccgcgtcattttcca 607  Q
    || ||| |  || ||||||||||    
T  12242729 acatgagtttgcatcattttcca 12242707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 27514357 - 27514589
Alignment:
Q  21 ctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggt-acatgcatgttttacaacataagggtatca 119  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  27514357 ctgagcataaacaacgtgatgcagcaggtttgaaatttccattctccaacatggcgagcaatgtatggttacatgcaagttttacaacataagggtataa 27514456  T
Q  120 acgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaattagggcaaactt 219  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27514457 acgtaattttgtcccaaaaactcattaattaaatttttcccgcccgattaactgcagttgaaaatgatggattttcaaaggattaaattagggcaaactt 27514556  T
Q  220 gcaggtttgtgttccatttataatattatgata 252  Q
    |||||||||||||||||||||||||||||||||    
T  27514557 gcaggtttgtgttccatttataatattatgata 27514589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 39209519 - 39209354
Alignment:
Q  22 tgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggtacatgcatgttttacaacataagggtatcaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39209519 tgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacattgcgagcaatgtatggtacatgcatgttttacaacataagggtaccaac 39209420  T
Q  122 gtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgat 187  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||    
T  39209419 gtaattttgtcccaaaaattcataaattaaatttttcccgcccggcgaactgcagttaaaaatgat 39209354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 377 - 633
Target Start/End: Original strand, 34697785 - 34698044
Alignment:
Q  377 aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct 476  Q
    |||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||| |||| ||||||||    
T  34697785 aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct 34697884  T
Q  477 acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc 573  Q
    |||||| |||||||||||||||| |  ||||||||||||||||||||||||   || |||||  || | ||| |  ||||||||||||||  |||||||     
T  34697885 acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca 34697984  T
Q  574 ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcatctct 633  Q
     ||||||| |||| ||||||||||||||||  ||| | ||||||| |||||||| |||||    
T  34697985 ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctcttcttctct 34698044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 377 - 633
Target Start/End: Original strand, 34720197 - 34720456
Alignment:
Q  377 aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct 476  Q
    |||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||| |||| ||||||||    
T  34720197 aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct 34720296  T
Q  477 acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc 573  Q
    |||||| |||||||||||||||| |  ||||||||||||||||||||||||   || |||||  || | ||| |  ||||||||||||||  |||||||     
T  34720297 acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca 34720396  T
Q  574 ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcatctct 633  Q
     ||||||| |||| ||||||||||||||||  ||| | ||||||| |||||||| |||||    
T  34720397 ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctcttcttctct 34720456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 467
Target Start/End: Original strand, 27909926 - 27910007
Alignment:
Q  386 tctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga 467  Q
    ||||||||||||||| | |||||||| |||||||||| |||||||||  || ||||||||| | |||  |||||||||||||    
T  27909926 tctgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga 27910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 23017092 - 23016965
Alignment:
Q  108 ataagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaat 207  Q
    |||||||||| || |||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  23017092 ataagggtataaatgtaattttgtcccaaaaactcattaattaaatttttcccgcccgatgaactgcagttgaaaatgatggattttcaaaggattaaat 23016993  T
Q  208 tagggcaaacttgcaggtttgtgttcca 235  Q
    ||||| ||||||||||||||||||||||    
T  23016992 tagggaaaacttgcaggtttgtgttcca 23016965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 36407015 - 36407074
Alignment:
Q  192 tttcaaaggattaaattagggcaaacttgcaggtttgtgttccatttataatattatgat 251  Q
    ||||||||||  ||||||||||||| |||||| || ||||||||||||||||||||||||    
T  36407015 tttcaaaggaacaaattagggcaaatttgcagcttggtgttccatttataatattatgat 36407074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 18449208 - 18449260
Alignment:
Q  192 tttcaaaggattaaattagggcaaacttgcaggtttgtgttccatttataata 244  Q
    ||||||||||  ||||||||||||| ||| || || |||||||||||||||||    
T  18449208 tttcaaaggagcaaattagggcaaatttggagcttggtgttccatttataata 18449260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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