View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14182_low_2 (Length: 613)
Name: NF14182_low_2
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14182_low_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 8825996 - 8826601
Alignment:
| Q |
20 |
gtttgtcacttcatctgccaacaaaataaaagaattgggtgcatccaatcaagatcataattgggaaaatcatgatagggattctatcttattcatgatc |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8825996 |
gtttgtcacttcatctaccaacaaaataaaagaattgggtgcatccaatcaagatcataattgggaaaatcgtgatagggattctatcttattcatgatc |
8826095 |
T |
|
| Q |
120 |
tttattgcttcagatttagtccaaactcttagtgttgctttattacgatcctcttcaacaagtgacacggcaggaatgtattgcttataaaacaaacttt |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8826096 |
tttattgcttcatatttagtccaaactcttagtgttgctttattaccatcctcttcaacgagtgacacggcaggaatgtattgcttataaaacaaacttt |
8826195 |
T |
|
| Q |
220 |
tgatatttggttttctaggaccttgtaacaccaaaaatgcttttcttttgttgactggaacaacgcaaaaaatgttaattccagttcagttatgttattt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8826196 |
tgatatttggttttctaggaccttgtaacaccaaaaatgcttttcttttgttgactgaaacaacgcaaaaaatgttaattccagttcagttatgttattt |
8826295 |
T |
|
| Q |
320 |
ggtaaatcttacaggctaatatttaacgaaattaaccattacaaaaaagtcaaattagagtgttcttatataaataaactaatatattaaaataatgaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8826296 |
ggtaaatcttacaggctaatatttaacgaaattaaccattacaaaaaagtcaaattagagtgttcttatataaataaactaatatattaaaataatgaaa |
8826395 |
T |
|
| Q |
420 |
atagtaggcctttgagccctgtcaaatgaggtcaagtcttagc------------gtgtgtttagttgagtggtggtcaaccacagcttgtgagttcaga |
507 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8826396 |
atagtaagcctttgagccctgtcaaatgaggtcaagtcttagcgtgtgtttagttgtgtgtttagttgagtggtggtcaaccacaggttgtgagttcaga |
8826495 |
T |
|
| Q |
508 |
gctctcaccgcgactttgagaagctccaaagtgtaactctggtccaatgttatttgatcctatgatttggtattctctaaccatacacctattcatttat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8826496 |
gctctcaccgcgactttgagaagctccaaagtgtagctctggtccaatgttatttgatcctatgatttggtattttctaaccatacacctattcatttat |
8826595 |
T |
|
| Q |
608 |
catcct |
613 |
Q |
| |
|
|||||| |
|
|
| T |
8826596 |
catcct |
8826601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University