View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14182_low_4 (Length: 386)

Name: NF14182_low_4
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14182_low_4
NF14182_low_4
[»] chr1 (6 HSPs)
chr1 (13-380)||(51772741-51773105)
chr1 (272-380)||(51804346-51804454)
chr1 (273-378)||(51780579-51780684)
chr1 (13-88)||(51790262-51790338)
chr1 (274-346)||(51808329-51808401)
chr1 (260-334)||(51768140-51768214)
[»] scaffold0710 (1 HSPs)
scaffold0710 (274-378)||(7223-7327)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 51773105 - 51772741
Alignment:
Q  13 aaatgaatcatgtgcatctgtcataattggtcaatcttgtgtggaaaggtaaaattcagcaagatgttttgtgcttgaggatgatcaatactgtcgatga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  51773105 aaatgaatcatgtgcatctgtcataattggtcaatcttgtgtggaaaggtaaaattcagca---tgttttgtgcttgaggatgatcaatactgtcgatga 51773009  T
Q  113 agtccttcttatcaaagacagtgcccaatatctgcaactataatatttatcatctcatttaagttctgtcttataatgtttgtcctcgcaacatgaagct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51773008 agtccttcttatcaaagacagtgcccaatatctgcaactataatatttatcatctcatttaagttcagtcttataatgtttgtcctcgcaacatgaagct 51772909  T
Q  213 tcattccagtccaactatttatattatgcacatatggtggacttttgatattcatctaagcttgagaaattgctttctcgagatagttgaatgttttatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51772908 tcattccagtccaactatttatattatgcacatatggtggacttttgatattcatctaagcttgagaaattgctttctcgagatagttgaatgttttatg 51772809  T
Q  313 ataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtccttctgtg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  51772808 ataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtacttttgtg 51772741  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 380
Target Start/End: Complemental strand, 51804454 - 51804346
Alignment:
Q  272 gcttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgt 371  Q
    |||||||||||||| | ||||| ||| ||||| ||||| ||||| || | ||||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  51804454 gcttgagaaattgcctgctcgatatatttgaaagttttctgatattttaggacacccataagccagaaatcaaaattgtccattgtgactatgtttatgt 51804355  T
Q  372 ccttctgtg 380  Q
     ||| ||||    
T  51804354 acttttgtg 51804346  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 273 - 378
Target Start/End: Complemental strand, 51780684 - 51780579
Alignment:
Q  273 cttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtc 372  Q
    |||| |||||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| || || |||||||| || || |||||||     
T  51780684 cttgtgaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatcgaagttatccactgtaactatatttatgta 51780585  T
Q  373 cttctg 378  Q
    ||||||    
T  51780584 cttctg 51780579  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 51790338 - 51790262
Alignment:
Q  13 aaatgaatcatgtgcatctg-tcataattggtcaatcttgtgtggaaaggtaaaattcagcaagatgttttgtgctt 88  Q
    |||||||||||||||||||| | ||||||| |||||||| |||||||||   |||| | |||||||| |||||||||    
T  51790338 aaatgaatcatgtgcatctgtttataattgatcaatcttttgtggaaagactaaatcccgcaagatggtttgtgctt 51790262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 51808401 - 51808329
Alignment:
Q  274 ttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaa 346  Q
    |||||||||||| | ||||||||| ||||| ||||| ||||| || |  |||||||||| |||||||||||||    
T  51808401 ttgagaaattgcctgctcgagatatttgaaagttttctgatattttagaacacccataagccagaaatcaaaa 51808329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 51768214 - 51768140
Alignment:
Q  260 atattcatctaagcttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaac 334  Q
    |||||||||||| |||||||||| || || |||| ||| ||||| ||||| ||||| || |||||||||| ||||    
T  51768214 atattcatctaaacttgagaaatcgccttttcgatatatttgaaagttttctgatatttgaagacacccaaaaac 51768140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 7327 - 7223
Alignment:
Q  274 ttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtcc 373  Q
    |||||||||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| || || |||||||| || || ||||||| |    
T  7327 ttgagaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatcgaagttatccactgtaactatatttatgtac 7228  T
Q  374 ttctg 378  Q
    |||||    
T  7227 ttctg 7223  T

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